View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9118_low_7 (Length: 596)
Name: NF9118_low_7
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 55 - 413
Target Start/End: Original strand, 53842272 - 53842630
Alignment:
| Q |
55 |
gggaaatagtcatttatacctgaattccgttaggcgagttctgcgccgtgagaacacgaacggaagactcattctccggcaacagttgagggtgaaatat |
154 |
Q |
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| T |
53842272 |
gggaaatagtcatttatacctgaattccgttaggcgagttctgcgccgtgagaacacgaacggaagactcattctcctgcaacggttgagggtgaaatat |
53842371 |
T |
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| Q |
155 |
gttaacggcggcaacttttggtgcaagcttcaacaatgagaatttgaacgcatctgagtctaaaggactatgcagaaaaagatcagaattaggatactct |
254 |
Q |
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| T |
53842372 |
gttaacggcggcaacttttggtgcaagcttcaacaatgagaatttgaacgcatctgagtctaaaggactatgcagaaaaagatcagaattaggatactct |
53842471 |
T |
|
| Q |
255 |
tttaatatcatctccaatatcgaaggaccagttaattcaaatcttctagcaccaccaaccaaacatacagcaattttggatcgtaacaattcatcttttg |
354 |
Q |
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| T |
53842472 |
tttaatatcatctccaatatcgaaggaccagttaattcaaatcttctagcaccaccaaccaaacatacagcaattttggatcgtaacaattcatcttttg |
53842571 |
T |
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| Q |
355 |
aaggtgaagaattagcagtgttgataaaaggaaggttggaaagaagattatgaacagaa |
413 |
Q |
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| T |
53842572 |
aaggtgaagaattagcagtgttgataaaaggaaggttggaaagaagattctgaacagaa |
53842630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 72 - 403
Target Start/End: Original strand, 53843992 - 53844320
Alignment:
| Q |
72 |
acctgaattccgttaggcgagttctgcgccgtgagaacacgaacggaagactcattctccggcaacagttgagggtgaaatatgttaacggcggcaactt |
171 |
Q |
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| T |
53843992 |
acctggattccgttaggcaacttgtgcgccgtgagaacacgaacaaaagactcattctcctggaactattgagggcgaaatattttaacagcagcaacat |
53844091 |
T |
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| Q |
172 |
ttggtgcaagcttcaacaatgagaatttgaacgcatctgagtctaaaggactatgcagaaaaagatcagaattaggatactcttttaatatcatctccaa |
271 |
Q |
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|||| |||| ||| | |||||||| ||||| | |||||||||||| |||||||||| |||||||| ||||| || |||||||| | |||||| ||||| |
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| T |
53844092 |
ttggcgcaaacttgagaaatgagaacttgaatgaatctgagtctaacggactatgcaagaaaagatccgaattcgggtactctttcagtatcatttccaa |
53844191 |
T |
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| Q |
272 |
tatcgaaggaccagttaattcaaatcttctagcaccaccaaccaaacatacagcaattttggatcgtaacaattcatcttttgaaggtgaagaattagca |
371 |
Q |
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| T |
53844192 |
tattgaaggtcccgttaattcgaaccttctagcaccaccaaccaaacacaccgcaattttggatcgtaacaattcatctttcgaaggt---gaattagcc |
53844288 |
T |
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| Q |
372 |
gtgttgataaaaggaaggttggaaagaagatt |
403 |
Q |
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| T |
53844289 |
gtgttgatgtaaggaatgttgaacagaagatt |
53844320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 479 - 581
Target Start/End: Original strand, 53842696 - 53842798
Alignment:
| Q |
479 |
aggaattatcaacacaaggatacgccaattaatatcagaaaaccgtttagtaaatggatacattgattttgtaggactctttatcatcttcaacgctgtt |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53842696 |
aggaattatcaacacaaggatacgccaattaatatcagaaaaccgtttagtaaatggatacattgattttgtaggactctttatcatcttcaacgctgtt |
53842795 |
T |
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| Q |
579 |
tgt |
581 |
Q |
| |
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||| |
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| T |
53842796 |
tgt |
53842798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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