View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9118_low_8 (Length: 557)
Name: NF9118_low_8
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Complemental strand, 42222314 - 42221792
Alignment:
| Q |
17 |
tggtggtagggggatgttggttcaatttgagagaaggtttagaaaaaacaagtaaataccaacccggtttgattctttacaaccaacgtttgattcaaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222314 |
tggtggtagggggatgttggttcaatttgagagaaggtttagaaaaaacaagtaaataccaacccggtttgattctttacaaccaacgtttgattcaaat |
42222215 |
T |
|
| Q |
117 |
tctattcagatgagactaattggcgttgcattattgcatgggctgacgcaccccaccaattcaagtttctaannnnnnnnnnnn-catgtgaagacaaat |
215 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42222214 |
tctatacagatgagattaattggcgttgcattattgcatgggctgacgcaccccaccaattcaagtttctaattttttttttcttcatgtgaagacaaat |
42222115 |
T |
|
| Q |
216 |
ggttttgcagtcaatttattttatacaagcactcaaactattaagacaagcacgatttataggccaattctattgtaattattaatcttatataattttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222114 |
ggttttgcagtcaatttattttatacaagcactcaaactattaagagaagcacgatttataggccaattctattgtaattattaatcttatataattttt |
42222015 |
T |
|
| Q |
316 |
tctgtcaaaaaatcctcttctattttgcatcaccttttagataaacattcaattttaggcaacgtgtcgttcaatttgattcttactaatatttttctct |
415 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222014 |
tctgtcaaaaaaacctcttctattttgcatcaccttttagataaactttcaattttaggcaacgtgtcgttcaatttgattcttactaatatttttctct |
42221915 |
T |
|
| Q |
416 |
tatttttaacttgtagacatcttcacctctaagaaagtatgaaacaaagttgtggtttcatgatagctaatgctggtatttattctgattattatgtgta |
515 |
Q |
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| T |
42221914 |
tatatttaacttgtagacatcttcacctctaagaaagtatgaaacaaagttgtggtttcatgatagctaatgctggtatttattctgattattatgtgta |
42221815 |
T |
|
| Q |
516 |
tgagtgaagatatttgtcagcat |
538 |
Q |
| |
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| T |
42221814 |
tgagtgaagatatttgtcagcat |
42221792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 42872458 - 42872422
Alignment:
| Q |
141 |
gttgcattattgcatgggctgacgcaccccaccaatt |
177 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
42872458 |
gttgcactattgcatgggctgacgcaccccaccaatt |
42872422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 424 - 538
Target Start/End: Complemental strand, 1717200 - 1717081
Alignment:
| Q |
424 |
acttgtagacatcttcacctctaagaaagtatgaaacaaagttgtggtttcat-----gatagctaatgctggtatttattctgattattatgtgtatga |
518 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || |
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| T |
1717200 |
acttctagacatcttcacctctaagaaagtatgaaacaaagttgtggtttcatttcatgatagctaatgctcgtatttattctgattattatgtgtagga |
1717101 |
T |
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| Q |
519 |
gtgaagatatttgtcagcat |
538 |
Q |
| |
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| T |
1717100 |
gtgaagatatttgtgagcat |
1717081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 8992298 - 8992340
Alignment:
| Q |
141 |
gttgcattattgcatgggctgacgcaccccaccaattcaagtt |
183 |
Q |
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|||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
8992298 |
gttgcactattgcatgggctggcgcacccctccaattcaagtt |
8992340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 8973476 - 8973520
Alignment:
| Q |
139 |
gcgttgcattattgcatgggctgacgcaccccaccaattcaagtt |
183 |
Q |
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|||||||| ||||||||| |||| ||| ||||||||||||||||| |
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| T |
8973476 |
gcgttgcactattgcatgagctggcgcgccccaccaattcaagtt |
8973520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 11652334 - 11652298
Alignment:
| Q |
141 |
gttgcattattgcatgggctgacgcaccccaccaatt |
177 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||| |
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| T |
11652334 |
gttgcactattgcatgggctggcgcaccccaccaatt |
11652298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 26984612 - 26984572
Alignment:
| Q |
139 |
gcgttgcattattgcatgggctgacgcaccccaccaattca |
179 |
Q |
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|||||||| |||||||||||||| |||| |||||||||||| |
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| T |
26984612 |
gcgttgcactattgcatgggctggcgcatcccaccaattca |
26984572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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