View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9119_high_15 (Length: 361)
Name: NF9119_high_15
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 34448722 - 34449066
Alignment:
| Q |
1 |
aaaatcagccaacattcttctaaatgaagacttagaagctaaaatagcagattttggactctctaaggtgtttaagaatagtgatatccaaaatgcggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448722 |
aaaatcagccaacattcttctaaatgaagacttagaagctaaaatagcagattttggactctctaaggtgtttaagaatagtgatatccaaaatgcggat |
34448821 |
T |
|
| Q |
101 |
tctacattgattcatgttgatgtgagtggcgaaaaatctgcaatcatggggacaatgggataccttgatccagagtgagttattattccaactcagttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448822 |
tctacattgattcatgttgatgtgagtggcgaaaaatctgcaatcatggggacaatgggataccttgatccagagtgagttattattccaactcagttca |
34448921 |
T |
|
| Q |
201 |
caaagttacagttcaacttatcctaagactattttcggttcagctcgaaaacattaaaccgatgcactgtaactttataccaccagttcggttcggttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34448922 |
caaagttacagttcaacttatcctaaaactattttcggttcagctcgaaaacattaaaccgatgcactgaaactttataccaccagttcggttcggttta |
34449021 |
T |
|
| Q |
301 |
ggaagaaccattaataattctttttctattttaccagtattgaac |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34449022 |
ggaagaaccattaataattctttttctattttaccagtattgaac |
34449066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 21394829 - 21395158
Alignment:
| Q |
1 |
aaaatcagccaacattcttctaaatgaagacttagaagctaaaatagcagattttggactctctaaggtgtttaagaatagtgatatccaaaatgcggat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |
|
|
| T |
21394829 |
aaaatcagccaacatttttctaaatgaagagttagaagctaaaatagcagattttgga--------ggtgtttaagaatagtgatacccaaaatgcagat |
21394920 |
T |
|
| Q |
101 |
tctacattgattcatgttgatgtgagtggcgaaaaatctgcaatcatggggacaatgggataccttgatccagagtgagttattattccaactcagttca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
21394921 |
tctacattgattcatgttgatgttagtggcgaaaaatctgcaatcatggggacaatgggataccttgatccagagtaagttattattccaactcagttta |
21395020 |
T |
|
| Q |
201 |
caaagttacagttcaacttatcctaagactattttcggttcagctcg-aaaacattaaaccgatgcactgtaactttataccaccagttcggttcggttt |
299 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
21395021 |
caaagttacagttcaacttatcgtaaaactagtttcggttcagctcgaaaaacattaaaccgatgcactgaaactttataccaccagtccggttcggttt |
21395120 |
T |
|
| Q |
300 |
aggaagaaccattaataattctttttctattttaccag |
337 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21395121 |
aggaagaaccattaatagttctttttatattttaccag |
21395158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 34507075 - 34507130
Alignment:
| Q |
261 |
gatgcactgtaactttataccaccagttcggttcggtttaggaagaaccattaata |
316 |
Q |
| |
|
||||||| | ||||||||||||||| ||| ||| ||||||||||||| |||||||| |
|
|
| T |
34507075 |
gatgcaccgaaactttataccaccacttcagtttggtttaggaagaagcattaata |
34507130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University