View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_high_6 (Length: 473)
Name: NF9119_high_6
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 3706379 - 3705939
Alignment:
| Q |
19 |
tcacctccttctccaaccaaacgccacaacaagatctcagttatcggcgcaggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctag |
118 |
Q |
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| T |
3706379 |
tcacctccttctccaaccaaacgccacaacaagatctcagttatcggcgcaggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctag |
3706280 |
T |
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| Q |
119 |
tcgacgagcttgttcttgttgacaccattcctgacaaactacgaggtgagatgctagatctacaacatgctgcggccttcctcccccgtactaagatcca |
218 |
Q |
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| T |
3706279 |
tcgacgagcttgttcttgttgacgccattcctgacaaactacgaggtgagatgctggatctacaacatgctgcggccttcctcccccgcactaagatcca |
3706180 |
T |
|
| Q |
219 |
ggcctccactgactattcagtgacgatggggtctgacctctgcatcgtcactgctggggctcgccagattaatggcgagtccagattgaatttgctacaa |
318 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3706179 |
ggcctccactgactattcagtgacgatgggttccgacctctgcatcgtcactgctggggctcgtcagattaatggcgagtccagattgaatttgctacaa |
3706080 |
T |
|
| Q |
319 |
aggaatgtagctttgtttnnnnnnnttataccgcctttggttcgttactctcctcattgtgttcttctaattgtttccaatcctgttgatgtgctcactt |
418 |
Q |
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| T |
3706079 |
aggaatgtagctttgtttaaaaaaattataccgcctttggttcgttactctcctcattgtgttcttctaattgtttccaatcctgttgatgtgctcactt |
3705980 |
T |
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| Q |
419 |
acattgcttggaaactttctggtttcccctccaaccgcgtc |
459 |
Q |
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| T |
3705979 |
acattgcttggaaactttctggtttcccctccaaccgcgtc |
3705939 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 41765147 - 41765310
Alignment:
| Q |
43 |
cacaacaagatctcagttatcggcgcaggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctagtcgacgagcttgttcttgttgaca |
142 |
Q |
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|||||||||||||| || |||||||| |||||||| || ||||| || ||||| ||||||||||| |||||||| |||||||| || | || |||| |
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| T |
41765147 |
cacaacaagatctccgtcatcggcgccggcaacgtcggcatggccattgctcagaccatcctaactcaagacctcacagacgagctcgtcatcgtcgaca |
41765246 |
T |
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| Q |
143 |
ccattcctgacaaactacgaggtgagatgctagatctacaacatgctgcggccttcctcccccg |
206 |
Q |
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|| || |||||||| || || || ||||| ||||| ||||| ||||| || ||||||||||| |
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| T |
41765247 |
acaaacccgacaaactccgcggcgaaatgcttgatcttcaacacgctgctgctttcctcccccg |
41765310 |
T |
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