View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_high_8 (Length: 440)
Name: NF9119_high_8
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 31591289 - 31590877
Alignment:
| Q |
16 |
ggaagcacttgctattggaactggatcaaactcggcaaatacctacatattagaagcaaaaattcacccaccacgacaataaaatttttcaagaaaaacc |
115 |
Q |
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| T |
31591289 |
ggaagcacttgctattggaactggatcaaactcggcaaatacctacatattagaagcaaaaattcacccaccacgacaataacatttttcaagaaaaacc |
31591190 |
T |
|
| Q |
116 |
gcaatcatgaataacaaaactaattaggcgaagatgagacattattaagaggaatgagacagatagtaaatactttatctggtgttgctccaaactcttt |
215 |
Q |
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| T |
31591189 |
gcaatcatgaataacaaaactaattaggcgaagatgagacattattaagaggaatgaaacagatagtaaatactttatctggtgttgctccaaactcttt |
31591090 |
T |
|
| Q |
216 |
tttgaatacatcacatatttgttcatacgaagaaaccggacatctatttagcatggactccctcatggtctgaacatactcttgaggaactaagtattcc |
315 |
Q |
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| T |
31591089 |
cttgaatacatcacatatttgttcatacgaagaaaccggacatctatttagcatggactccctcatggtctgaacatactcttgaggaactaagtattcc |
31590990 |
T |
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| Q |
316 |
tgtcattgacaatgaacaatcaaacaactaagcattgcatatcgtgttgagtacataataatttgactacacagtttgaaccgaaatataccaattgccc |
415 |
Q |
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||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31590989 |
tgtcattgacaataaacaaacaaacaactaagcattgcctatcgtgttgagtacataataatttgactgcacagtttgaaccgaaatataccaattgccc |
31590890 |
T |
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| Q |
416 |
aagatgctgtcca |
428 |
Q |
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| T |
31590889 |
aagatgctgtcca |
31590877 |
T |
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