View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_1 (Length: 817)
Name: NF9119_low_1
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 577; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 14 - 630
Target Start/End: Complemental strand, 6836532 - 6835917
Alignment:
| Q |
14 |
atactcaaactaaaataattaaaggaacttaacatctacgatcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836532 |
atactcaaactaaaataattaaaggaacttaacatctacc-tcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaaa |
6836434 |
T |
|
| Q |
114 |
acataaacacgtttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatttgggctaaatatattctctgccgcaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836433 |
acataaacacgtttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatttgggctaaatatattctctgccgcaaat |
6836334 |
T |
|
| Q |
214 |
atttttccttcaccctagcaaacaaactataatcactaacatttgctagcttattaaaaaataaataccagtccttacaaggataacatttaaacataca |
313 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836333 |
atctttccttcaccctagcaaacaaactataatcactaacatttgctagcttattaaaaaataaataccagtccttacaaggataacatttaaacataca |
6836234 |
T |
|
| Q |
314 |
tatcttacatatattcaacacctaacacactaattatagtcgtaattaaagattatacaatcaaatcaagcgggtgcaatcatcattggagtggttgcct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836233 |
tatcttacatatattcaacacctaacacactaattatagtcgtaattaaagattgtacaatcaaatcaagcgggtgcaatcatcattggagtggttgcct |
6836134 |
T |
|
| Q |
414 |
ttttacattcaccttttttgacgaaatcactaattccccaaataataatacgtagtgtgagtaagaaacccgagaaagaaaacaatccaatccaaatacg |
513 |
Q |
| |
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| T |
6836133 |
ttttacattcaccttttttgacgaaatcactaattccccaaataataatacgcagtgtgagtaagaaacccgagaaagaaaacaatccaatccaaatacg |
6836034 |
T |
|
| Q |
514 |
aagcaatgttgaaagtaaaaccgcattatcagcccagacaggatctggggtaaccattaatattgctattcggtaagtaacaagaagagttgtgagagtg |
613 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6836033 |
aagcaatgttgaaagtaaaacctcattatcagcccagacaggatctggggtaaccattaatattgctattcggtaagtaacaagaagagatgtgagagtg |
6835934 |
T |
|
| Q |
614 |
aaactcatgccaataga |
630 |
Q |
| |
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|||| ||||| |||||| |
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| T |
6835933 |
aaacacatgctaataga |
6835917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 640 - 800
Target Start/End: Complemental strand, 6833065 - 6832905
Alignment:
| Q |
640 |
aattatgaaattatgtatgattttttctcaaaaaataaaataatgtatgaattatgatacactattatctttcttttttcctccatcccttgacgggatg |
739 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6833065 |
aattataaaattatgtatgattttttctcaaaaaataaaataatgtatgaattatgatacactattatctttcttttttcctccatcccttgacgggatg |
6832966 |
T |
|
| Q |
740 |
atgggtcgatccatcaaacaaatttatttttcattcacattaaccatataagttcataatg |
800 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6832965 |
atgggtcgatccatcaaacaaatttatttttcattcacattaaccatataagttcataatg |
6832905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 236 - 632
Target Start/End: Complemental strand, 6633158 - 6632754
Alignment:
| Q |
236 |
caaactataatcactaacatttgctagcttatt--aaaaaataaa-----taccagtccttacaaggataacatttaaacata--catatcttacatata |
326 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
6633158 |
caaactataatcactaacatttgct----tattgaaaaaaataaaaaatataccagtccttacaaggataaaatttaaacatatacatatcttacatata |
6633063 |
T |
|
| Q |
327 |
ttcaacacctaacacactaattatagtcgtaattaaagattatacaatcaaatcaagcgggtgcaatcatcattggagt---ggttgcctttttacattc |
423 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| ||| || |||||||| || || | || | ||||||| | |||||||||||| ||| |
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| T |
6633062 |
ctcaacatctaacacactaattatagtcgaaattaaagattgtacgattaaatcaaggggttggagtctttgttggagttctgtttgcctttttaccttc |
6632963 |
T |
|
| Q |
424 |
accttttttgacgaaatcactaattccccaaataataatacgtagtgtgagtaagaaacccgagaaagaaaacaatccaatccaaatacgaagcaatgtt |
523 |
Q |
| |
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|| ||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||| |||||| ||| |
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| T |
6632962 |
acgtttattgaggaaatcactaattccccaaataataatacgcagtgtgagtaacaaacccgagaaggaaaacaatcccatccaaatataaagcaacgtt |
6632863 |
T |
|
| Q |
524 |
gaaagtaaaaccgcattatcagcccagacaggatctggggtaaccattaatattgctattcggtaagtaacaagaagagttgtgagagtgaaactcatgc |
623 |
Q |
| |
|
||||| ||| || ||||| |||||| | ||||||||||| |||| || |||||| ||||||||||||||||| |||||||||||||| ||| | |
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| T |
6632862 |
gaaagaaaatccaacgtatcatcccagagaatatctggggtaatcattcctactgctatgtcgtaagtaacaagaagagatgtgagagtgaaacacatcc |
6632763 |
T |
|
| Q |
624 |
caatagata |
632 |
Q |
| |
|
| ||||||| |
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|
| T |
6632762 |
ctatagata |
6632754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 6633393 - 6633223
Alignment:
| Q |
13 |
aatactcaaactaaaataattaaaggaacttaacatctacgatcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaa |
112 |
Q |
| |
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||||| ||||||||||||||||| | |||||||||||| | ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
6633393 |
aatacccaaactaaaataattaaggaaacttaacatctgcc-tcattaaaaaccttgctagaagaatccagcaaggaaaaaagagtacagagcaaacaaa |
6633295 |
T |
|
| Q |
113 |
aacataaacacgtttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatt |
185 |
Q |
| |
|
||||||||||| ||||||||||| | ||| ||||| |||||||||||||||| |||||||||||||||||| |
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| T |
6633294 |
aacataaacacatttatattacacaaaaaatacaat-ttccacacaaatacatagcaaatgaagtggttaatt |
6633223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 328 - 633
Target Start/End: Complemental strand, 6808287 - 6807975
Alignment:
| Q |
328 |
tcaacacctaacacactaattatagtcgtaattaaagattatacaatcaaatcaagcgggtgcaatcatcattggagtggttgccttttta----cattc |
423 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| ||| ||||||||||| | ||| |||| || |||||| ||| |||||| | | ||| |
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|
| T |
6808287 |
tcaacacctagcacactaattatagtcgtaattgaagattgtacgatcaaatcaagagagtggaatcttcggtggagttgtttccttttgattgaccttc |
6808188 |
T |
|
| Q |
424 |
accttttttgac---gaaatcactaattccccaaataataatacgtagtgtgagtaagaaacccgagaaagaaaacaatccaatccaaatacgaagcaat |
520 |
Q |
| |
|
|||||| |||| | ||||| ||||| |||||||| |||||| || |||||||| |||||||||| |||||||||||||||||||| ||||| |
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|
| T |
6808187 |
acctttattgagatagtaatcattaattgtccaaataagaatacgcagagtgagtaacaaacccgagatggaaaacaatccaatccaaattttaagcacc |
6808088 |
T |
|
| Q |
521 |
gttgaaagtaaaaccgcattatcagcccagacaggatctggggtaaccattaatattgctattcggtaagtaacaagaagagttgtgagagtgaaactca |
620 |
Q |
| |
|
||||||||||| | ||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |
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|
| T |
6808087 |
gttgaaagtaatttctcattaatactatatacaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagaca |
6807988 |
T |
|
| Q |
621 |
tgccaatagataa |
633 |
Q |
| |
|
| || |||||||| |
|
|
| T |
6807987 |
tccccatagataa |
6807975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 550 - 630
Target Start/End: Complemental strand, 6634046 - 6633966
Alignment:
| Q |
550 |
gacaggatctggggtaaccattaatattgctattcggtaagtaacaagaagagttgtgagagtgaaactcatgccaataga |
630 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |
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|
| T |
6634046 |
gacaggaactggggtaaccattaatattgctattcggtaagtaacaagaagagatgtgagagtgaaacacatgctaataga |
6633966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 416
Target Start/End: Complemental strand, 6636486 - 6636358
Alignment:
| Q |
288 |
ttacaaggataacatttaaacatacatatcttacatatattcaacacctaacacactaattatagtcgtaattaaagattatacaatcaaatcaagcggg |
387 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||| |||| | || ||||||||||||||||||||||||||||| || ||||||||||| | | |
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|
| T |
6636486 |
ttacaaggataaaaattaaacatacaaatcttacatatactcaatgcatagcacactaattatagtcgtaattaaagattgcacgatcaaatcaagagtg |
6636387 |
T |
|
| Q |
388 |
tgcaatcatcattggagtggttgcctttt |
416 |
Q |
| |
|
|| |||| || |||||||||| |||||| |
|
|
| T |
6636386 |
tggaatcttcggtggagtggtttcctttt |
6636358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 6808512 - 6808420
Alignment:
| Q |
92 |
aaagagtacagagcaaacaaaaacataaacacgtttatattacatataaat---gacaatcttccacacaaatacatgccaaatgaagtggtta |
182 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||| |
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| T |
6808512 |
aaagagtacagatcaaacaaaaacataaccacatttatattacatataaataaagacaa-cttacacacaagtacatgccaaatgaagtggtta |
6808420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 6636663 - 6636597
Alignment:
| Q |
126 |
ttatattacatataaat----gacaatcttccacacaaatacatgccaaatgaagtggttaatttggg |
189 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6636663 |
ttatattacatataaataaaagacaa-cttccacacaaatacatgccaaatgaagtggttaacttggg |
6636597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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