View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9119_low_11 (Length: 539)

Name: NF9119_low_11
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9119_low_11
NF9119_low_11
[»] chr3 (6 HSPs)
chr3 (253-526)||(25628688-25628960)
chr3 (18-99)||(25628424-25628506)
chr3 (127-198)||(25628507-25628578)
chr3 (251-347)||(25621122-25621216)
chr3 (117-157)||(25636448-25636488)
chr3 (265-315)||(25625014-25625064)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 253 - 526
Target Start/End: Original strand, 25628688 - 25628960
Alignment:
Q  253 aaacaattctgtagtaaaggttggtactagttttatcttttatta--gcttaataatgctgcaataatccaagttcaatctacttggaagatgattctaa 350  Q
    |||| |||||| ||||||||| ||||| |||||||||||||||||  ||||||| ||||||||||   |||||||||||||||||||||||||||||       
T  25628688 aaactattctgcagtaaaggtaggtaccagttttatcttttattatagcttaatcatgctgcaat---ccaagttcaatctacttggaagatgattc--- 25628781  T
Q  351 tagtaaggaacttattgatcatgtgtagttaatgaaggcttacttttttcaatgtttagtttctaaaacttatactatattgattat-tcctgatcga-- 447  Q
       |||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||| |||||||   |||||||||| | |  |||||||      
T  25628782 ---taaggaacttgttgatcatgtgtagttaataaatgcttacttttttcattgtttagtttctgaaactta---tatattgattttcttatgatcgagc 25628875  T
Q  448 ------ggcattggttctcgtatttcacactatcaaatacaatcacaaacttgttctttctcgtcttgtttcttaccaagttctt 526  Q
          ||||||||||||||||| ||||||| || |||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  25628876 ctccttggcattggttctcgtatctcacactctcgaatacactcacaaacctgtcctttctcgtcttgtttcttaccaagttctt 25628960  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 25628424 - 25628506
Alignment:
Q  18 ttaagtagattgtactattgggatgatatatttttgttgagatgagg-tgataaaataattcttttcttaaatttgatagttt 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  25628424 ttaagtagattgtactattgggatgatatattttggttgagatgaggatgatagaataattcatttcttaaatttgatagttt 25628506  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 25628507 - 25628578
Alignment:
Q  127 atcacttttgctttaagtcatattctagaaccaaacacacataacttgctatttcctacaagcagtattaac 198  Q
    |||||||||||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  25628507 atcacttttgcttttagtcatcttctaaaaccaaacacacatgacttgctatttcctacaagcagtattaac 25628578  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 25621122 - 25621216
Alignment:
Q  251 ttaaacaattctgtagtaaaggttggtactagttttatcttttattagcttaataatgctgcaataatccaagtt-caatctacttggaagatgattc 347  Q
    ||||| ||||||| || |||||||||| |||  |||||||||||| ||||||||| ||  ||   |||||||||| ||||||||||||||||||||||    
T  25621122 ttaaaaaattctgcagaaaaggttggtgctaaatttatcttttataagcttaatagtgtggc---aatccaagttccaatctacttggaagatgattc 25621216  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 25636448 - 25636488
Alignment:
Q  117 tgacaatcaaatcacttttgctttaagtcatattctagaac 157  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  25636448 tgacaatcaaatcactgttgcttttagtcatattctagaac 25636488  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 25625014 - 25625064
Alignment:
Q  265 agtaaaggttggtactagttttatcttttattagcttaataatgctgcaat 315  Q
    ||||||||||||| || ||||| |||||||||||||||||| || ||||||    
T  25625014 agtaaaggttggtgctggttttttcttttattagcttaatagtgttgcaat 25625064  T

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