View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_12 (Length: 520)
Name: NF9119_low_12
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 37638209 - 37637705
Alignment:
| Q |
1 |
tgtgggaaattggttcatgggttggcgattaagattggtacgcaaggttcatcaatatatgttgataatgcacttatggatatgtatgctacttgttgtg |
100 |
Q |
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| T |
37638209 |
tgtgggaaattggttcatgggttggcgattaagattggtacgcaaggttcatcaatatatgttgataatgcacttatggatatgtatgctacttgttgtg |
37638110 |
T |
|
| Q |
101 |
atagtatggataatgcaagattggtttttgaggatattggaactaaaaatgctgtttcttggactactttgattactgggtatactcatcgacgtgatgc |
200 |
Q |
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| T |
37638109 |
atagtatggataatgcaagattggtttttgaggatattggaactaaaaatgctgtttcttggactactttgattactgggtatactcatcgacgtgatgc |
37638010 |
T |
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| Q |
201 |
gtttggtggtcttcgtgtttttcgccaaatgtttatggtaaaattctgttttatattgtaaatactttattgtttgagtcattgatgaaagaatg--nnn |
298 |
Q |
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| T |
37638009 |
gtttggtggtcttcgtgtttttcgccaaatgtttatggtaagattctgttttaaattgtaaatactttattgtttgagtcattgatgaaagaatgaaaaa |
37637910 |
T |
|
| Q |
299 |
nnnnntcattgatacgagcacgagatgaaatatgtttaacatagttttcttttttgatggagaacaggaggaaggagagttgagtcccttcagcttctca |
398 |
Q |
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| T |
37637909 |
aaaaatcattgatacgagcacgagatgaaatatgtttaacatagttttcttttttgatggagaacaggaggaaggagagttgagtcccttcagcttctca |
37637810 |
T |
|
| Q |
399 |
attgctgttagtgcttgtgcctcaattgggtcaagtaacttgggtaagcaggtacatgctgcagtaattaatcatggatttgagtccaatcttcctgtga |
498 |
Q |
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| T |
37637809 |
attgctgttagtgcttgtgcctcaattgggtcaagtaacttgggtaagcaggtacatgctgcagtaattaatcatggatttgagtccaatcttcctgtga |
37637710 |
T |
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| Q |
499 |
tgaac |
503 |
Q |
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| T |
37637709 |
tgaac |
37637705 |
T |
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