View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9119_low_19 (Length: 437)
Name: NF9119_low_19
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 37638768 - 37638365
Alignment:
| Q |
18 |
gtatgatctatttgaaaccacgcacaactaacaaactattaaaatgagatgatggaaatatgaattttccgacaaaaactttctctaaaaattatcgtat |
117 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37638768 |
gtatgacctatttgaaaccaggcacaactaacaaacgattaaaatgagatgatggaaatatgaattttccaacaaaaactttctctaaaaattatcgtat |
37638669 |
T |
|
| Q |
118 |
aggattaaggacacgagggaatcatagttattgctcggagcatttttgtttggtgaatattgctttgagcatttgttatcaaggttaatgccaatggcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37638668 |
aggattaaggacacgagggaatcatagttattgctcggagcatttttgtttggtgaatattgctctgagcatttgttaacaaggttaatgccaatggcat |
37638569 |
T |
|
| Q |
218 |
gtagcagaaagttactatcctcaacgaatttccgacccattccattttcagtccaaaactctcttcgctgcatccaaaatgacacaccctttaatcccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638568 |
gtagcagaaagttactatcctcaacgaatttccgacccattccattttcagtccaaaactctcttcgctgcatccaaaatgacacaccctttaatcccaa |
37638469 |
T |
|
| Q |
318 |
agacttaacgggtttaacaaccgatctcataaagtcctattttgacaaaggctcgttcgaagaagcacacacactgttcgacgaaatgcctcacagagac |
417 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37638468 |
agacttaacgggtttaacaacggatctcataaagtcctattttgacaaaggctcgttcgaagaagcgcacacactgttcgacgaaatgcctcacagagac |
37638369 |
T |
|
| Q |
418 |
gtta |
421 |
Q |
| |
|
|||| |
|
|
| T |
37638368 |
gtta |
37638365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University