View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_2 (Length: 729)
Name: NF9119_low_2
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 99 - 712
Target Start/End: Complemental strand, 37545406 - 37544798
Alignment:
| Q |
99 |
gagttactccttaataaaattatacgattaattgataaggagaagttggactgagactccataaacaaatctcttatttcattcggcattcagttactaa |
198 |
Q |
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| T |
37545406 |
gagttactccttaataaaattatacgattaattg-----------ttggactgagactccataaacaaatctcttatttcattcggcattcagttactta |
37545318 |
T |
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| Q |
199 |
caaa----gtaacaccttttaattgtgtttagaataagactcatgcatatcgtggtttcaaccattacataaaggttcatcattcaaccataatttatta |
294 |
Q |
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| T |
37545317 |
tgaatcttgtaacaccttttaattgtgtttaagataagactcatgcatatcgtggtttcaaccattacataaaggttcatcattcaatcataatctatta |
37545218 |
T |
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| Q |
295 |
aagtttagatacacatgataataataaacaaatggttttatcttaaaacttgttttcaatttcaagcctttaaaaatgttaccttatggttgttggatca |
394 |
Q |
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| T |
37545217 |
aagtttagatacacatgataataataaacaaagtgttttatcttaaaacttgttttcaatttcaagcatttaaaaatgttaccttatggttgttggatca |
37545118 |
T |
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| Q |
395 |
caccttgaacctcagaggcgttaaagtcggatccttcacttatgggtgaaa------ttatatagataaacttaggttgcaaacatgcctcacacatgat |
488 |
Q |
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| T |
37545117 |
cactttgaacctcagaggcgttaaagtcggatccttcacttatgggtgaaactaggtttatatagataaacttaggttgcaaacacgcctcacacatgat |
37545018 |
T |
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| Q |
489 |
tctaattaatgcattgacaccatttgattggctatctatgcgccttgagcgtaggattatctgtcaacgcataatgatgagagattagggaattttgtgt |
588 |
Q |
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| T |
37545017 |
tctaattaatgcattgacaccatttgattgactatttatgcgccttgagcgtgggattatctgccaatgcacaatgatgagagataagggaattttgtgt |
37544918 |
T |
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| Q |
589 |
cacatgtggctttatctcacatgtctgcctcgtgcattgaacattgacgcaagcctcttttatgcttttgattcctcaactccaaattatctcatccttt |
688 |
Q |
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| T |
37544917 |
cacatgtggctttatctcaca----tgcctcgcgcattgaacattgacgaaagcctcttttatgcttttgattcctcaactccaaattatctcatccttt |
37544822 |
T |
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| Q |
689 |
gttatgtcttgtgacgtgggatat |
712 |
Q |
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| T |
37544821 |
gttatatcttgtgacgtgggatat |
37544798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 37545514 - 37545422
Alignment:
| Q |
19 |
caaatatggtagtaatagtaatggattatgtacacactaaacagaggagtgaatatgtgcatttgtaattattaattaatgagttactccttaat |
113 |
Q |
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| T |
37545514 |
caaatatggtagtaatagtaatggattatgtacac--taaacagcggagtgaatatgtgcatttgtaattattaattaatgagttactccttaat |
37545422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 1628661 - 1628730
Alignment:
| Q |
246 |
gtggtttcaaccattacataaaggttcatcattcaaccataatttattaaagtttagatacacatgataa |
315 |
Q |
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| T |
1628661 |
gtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataa |
1628730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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