View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_22 (Length: 429)
Name: NF9119_low_22
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 157 - 416
Target Start/End: Complemental strand, 38536486 - 38536227
Alignment:
| Q |
157 |
aatcatggatttattcttaaaatgaacatgaaattctgaatgttatatagtgtaaattgtgtctctgcaaatgatcctgggtgaatgtaccttgatattg |
256 |
Q |
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| T |
38536486 |
aatcatggatttattcttaaaatgaacatgaaattatgaatgttatatagtgtaaattgtgtctatgcaaatgatcctgggtgaatgtaccttgatattg |
38536387 |
T |
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| Q |
257 |
aatttcgttgtattttcaggtccaagctgtatataatgctatgagaagggatgacaggatgaaatactttttatagtatgttagattgtgtataggatgt |
356 |
Q |
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| T |
38536386 |
aatttcgttgtattttcaggtccaagctgtatataatgctatgaggagggatgacaggatgaaatactttttatagtatgttagattgtgtataggatgt |
38536287 |
T |
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| Q |
357 |
ggtgtttccaattgatatattgacatgcctgctttctagtggttaggctgattttgttct |
416 |
Q |
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| T |
38536286 |
ggtgtttccaattgatatattgacatgcctgctttctagtggttaggctgattttgttct |
38536227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 38536622 - 38536548
Alignment:
| Q |
19 |
atcagcaaggggtaaatatgtgtctgtaaacattgggccagtccaagttgtttccagcgaacaggtatttctgcc |
93 |
Q |
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| T |
38536622 |
atcagcaaggggtaaatatgtgtctgtaaacattgggccagtccaagttgtttccagcgaacaggtatttctgcc |
38536548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 53229709 - 53229752
Alignment:
| Q |
269 |
ttttcaggtccaagctgtatataatgctatgagaagggatgaca |
312 |
Q |
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| T |
53229709 |
ttttcaggtccaagctgtgtataatgctatgaggaggggtgaca |
53229752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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