View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9119_low_23 (Length: 424)
Name: NF9119_low_23
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_23 |
 | |
|
| [»] scaffold1437 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 34011953 - 34011545
Alignment:
| Q |
1 |
tgagttaatttccctatcctcttcagaaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34011953 |
tgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
34011854 |
T |
|
| Q |
101 |
aaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgtaatcactaagagatagatcagaatgaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34011853 |
aaccttgcaacgcgagaacttgccattcttaatgtgaactagtttcaagtgttcaattgcgaaaaaatgtgtaatcactaagagatagattggaatgaaa |
34011754 |
T |
|
| Q |
201 |
attgagctgaaaacgttttgtattttgatgtgtttgaagcataagaatagttcaatttataaagggtggctagaagtaattaaccaggcttaaattgagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34011753 |
attgagctgaaaacgttttgtattttgatgtgtttgaagcataagaatagttcaatttataaagggtggctagaagtaattaactaggcttaaattgagt |
34011654 |
T |
|
| Q |
301 |
caagggtcttaatctttgagggtcaaatcagtttttatttgctggtgccgcctccagcttttgctattaaatgtgatacaaacttatttctattgtggga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34011653 |
caagggtcttaatctttgagggtcaaatcagtttttatttgctggtgcggcctccaatttttgctattaaatgtgatacaaacttatttctattgtggga |
34011554 |
T |
|
| Q |
401 |
caaattatt |
409 |
Q |
| |
|
|||| |||| |
|
|
| T |
34011553 |
caaactatt |
34011545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 33149295 - 33148887
Alignment:
| Q |
1 |
tgagttaatttccctatcctcttcagaaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33149295 |
tgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
33149196 |
T |
|
| Q |
101 |
aaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgtaatcactaagagatagatcagaatgaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33149195 |
aaccttgcaacgcgagaacttgccattcttaatgtgaactagtttcaagtgttcaattgcgaaaaaatgtgtaatcactaagagatagattggaatgaaa |
33149096 |
T |
|
| Q |
201 |
attgagctgaaaacgttttgtattttgatgtgtttgaagcataagaatagttcaatttataaagggtggctagaagtaattaaccaggcttaaattgagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33149095 |
attgagctgaaaacgttttgtattttgatgtgtttgaagcataagaatagttcaatttataaagggtggctagaagtaattaactaggcttaaattgagt |
33148996 |
T |
|
| Q |
301 |
caagggtcttaatctttgagggtcaaatcagtttttatttgctggtgccgcctccagcttttgctattaaatgtgatacaaacttatttctattgtggga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33148995 |
caagggtcttaatctttgagggtcaaatcagtttttatttgctggtgcggcctccaatttttgctattaaatgtgatacaaacttatttctattgtggga |
33148896 |
T |
|
| Q |
401 |
caaattatt |
409 |
Q |
| |
|
|||| |||| |
|
|
| T |
33148895 |
caaactatt |
33148887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 33139285 - 33138923
Alignment:
| Q |
1 |
tgagttaatttccctatcctcttcagaaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| | ||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33139285 |
tgagctaatttctctatcctcttcggtaattgtttccatcatatttgatgctctttgcctcataacagaaacatattgtggtggtgccacctccataaaa |
33139186 |
T |
|
| Q |
101 |
aaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgtaatcactaagagatagatcagaatgaaa |
200 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| | |||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
33139185 |
aatcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggtgtaattgctaagagatagataggaatgaaa |
33139087 |
T |
|
| Q |
201 |
attgagctgaaaacgttttgtatt-ttgatgtgtttgaagcataaga--atagttcaatttataaagggtggctagaagtaattaaccaggcttaaattg |
297 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33139086 |
at------------gttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtggctagaagtaattaactaggcttaaattg |
33138999 |
T |
|
| Q |
298 |
agtcaagggtcttaatctttgagggtcaaatcagtttttatttgctggtgccgcctccagcttttgctattaaatg |
373 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| ||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
33138998 |
agtcaagggtcttaatctttgaggattaaatcaatttttattttttagtgccgcctccagcttttgctattaaatg |
33138923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 33142969 - 33142821
Alignment:
| Q |
30 |
ttgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgcc---at |
126 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||| ||| | | |
|
|
| T |
33142969 |
ttgtttcaatcatatttgatgttctatgcctcatcacagaaacatattgtggtggtgccactttcatgaaaaaccttataatccgagaatttgtcttttt |
33142870 |
T |
|
| Q |
127 |
tcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgtaat |
175 |
Q |
| |
|
||| |||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
33142869 |
tctaaatgtgaattaatttcaagtgtttaattgtggaaaaatgtgtaat |
33142821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 33142773 - 33142727
Alignment:
| Q |
250 |
gttcaatttataaagggtggctagaagtaattaaccaggcttaaatt |
296 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||| ||||||||||| |
|
|
| T |
33142773 |
gttcaatttataaggggtggccagaaataattaactaggcttaaatt |
33142727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 3215336 - 3215744
Alignment:
| Q |
1 |
tgagttaatttccctatcctcttcagaaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
100 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3215336 |
tgagttaattttcctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
3215435 |
T |
|
| Q |
101 |
aaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgtaatcactaagagatagatcagaatgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3215436 |
aaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgtaatcactaagagatagattggaatgaaa |
3215535 |
T |
|
| Q |
201 |
attgagctgaaaacgttttgtattttgatgtgtttgaagcataagaatagttcaatttataaagggtggctagaagtaattaaccaggcttaaattgagt |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
3215536 |
attgagctgaaatcgttttgtattttgatgtgtttgaagcataagaatagttcaatttataaagggtggctagaagtaattatctaggcttaaattgagt |
3215635 |
T |
|
| Q |
301 |
caagggtcttaatctttgagggtcaaatcagtttttatttgctggtgccgcctccagcttttgctattaaatgtgatacaaacttatttctattgtggga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
3215636 |
caagggtcttaatctttgagggtcaaatcagtttttatttgatggtgccgcctccagcttttgctattaaatatgttacaaacttatttctattgtggga |
3215735 |
T |
|
| Q |
401 |
caaattatt |
409 |
Q |
| |
|
|||| |||| |
|
|
| T |
3215736 |
caaactatt |
3215744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 32342908 - 32343040
Alignment:
| Q |
1 |
tgagttaatttccctatcctcttcagaaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
100 |
Q |
| |
|
|||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
32342908 |
tgagttgatttccctatcatcttcggtgattgtttccatcatctttgatgttctatgcctcatcacgctaacatactgtggtggtgctacctccatgaaa |
32343007 |
T |
|
| Q |
101 |
aaccttgcaacgcgagaacttgccattcttaat |
133 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||| |
|
|
| T |
32343008 |
aaccttgcaatgcgagaatttgccattgttaat |
32343040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 32350050 - 32350160
Alignment:
| Q |
8 |
atttccctatcctcttcagaaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaaaaccttg |
107 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32350050 |
atttccatatcctcttcagtaattgtttccatcatcattgatgttctacgcctcatcacgctaacatactgtggtggtgccacctccatgaaaaaccttg |
32350149 |
T |
|
| Q |
108 |
caacgcgagaa |
118 |
Q |
| |
|
||| ||||||| |
|
|
| T |
32350150 |
caatgcgagaa |
32350160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 376
Target Start/End: Original strand, 32343150 - 32343276
Alignment:
| Q |
250 |
gttcaatttataaagggtggctagaagtaattaaccaggcttaaattgagtcaagggtcttaatctttgagggtcaaatcagttttt-atttgctggtgc |
348 |
Q |
| |
|
||||||||||||| ||||||||||| | || ||| ||||||||||||||||||||||||| ||||| ||| | |||||| ||||| ||||| | |||| |
|
|
| T |
32343150 |
gttcaatttataaggggtggctagagatgat-aactaggcttaaattgagtcaagggtctttatcttaaaggtttaaatcaatttttcatttgttagtgc |
32343248 |
T |
|
| Q |
349 |
cgcctccagcttttgctattaaatgtga |
376 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |
|
|
| T |
32343249 |
cggctccaacttttgctattaaatgtga |
32343276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 32350270 - 32350341
Alignment:
| Q |
306 |
gtcttaatctttgagggtcaaatcagtttttatttgctggtgccgcctccagcttttgctattaaatgtgat |
377 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
32350270 |
gtcttaatctttgaggtttaaatcaatttttatttgttagtgccacctccagcttttgctattaaatgtgat |
32350341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 733 - 481
Alignment:
| Q |
1 |
tgagttaatttccctatcctcttcagaaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
733 |
tgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaacatattgtggtggtgccacctccatgaaa |
634 |
T |
|
| Q |
101 |
aaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgtaatcactaagagatagatcagaatgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
633 |
aaccttgcaacgcgagaacttgtcattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgtaatcactaagagatagattggaatgaaa |
534 |
T |
|
| Q |
201 |
attgagctgaaaacgttttgtattttgatgtgtttgaagcataagaatagttc |
253 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
533 |
attgagctgaaaacgttttatattttgatgtgtttgaagcataagaatagttc |
481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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