View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9119_low_26 (Length: 381)
Name: NF9119_low_26
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 76 - 365
Target Start/End: Original strand, 33485463 - 33485752
Alignment:
| Q |
76 |
gctcaaatctgtatccccattagggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
175 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485463 |
gctcaaatctgtatccccacttgggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
33485562 |
T |
|
| Q |
176 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccacaacaagtaggttttcagacatggt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33485563 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccacaacaagtaggttttcaaacatggt |
33485662 |
T |
|
| Q |
276 |
cttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgtgcaactaagaagcctggtctcttgaccacaattg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33485663 |
cttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgttcaactaagaagcctggtctcttgaccacaattg |
33485752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 76 - 365
Target Start/End: Original strand, 33498674 - 33498963
Alignment:
| Q |
76 |
gctcaaatctgtatccccattagggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
175 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33498674 |
gctcaaatctgtatccccacttgggagtgagtcatctgtgatcaactcacagtggcatccctatgaatcaagggaagcattcttagctgatcaaggatcc |
33498773 |
T |
|
| Q |
176 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccacaacaagtaggttttcagacatggt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33498774 |
tcaagttataataataacttgtctaatgcaattgtaacttcaaatccttcaaatgcattttcaatatctccaccacaacaagtaggttttcaaacatggt |
33498873 |
T |
|
| Q |
276 |
cttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgtgcaactaagaagcctggtctcttgaccacaattg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33498874 |
cttctcaaaatgttgtgttgaacatatgtggtggtgaagcacaattttgcatttgttcaactaagaagcctggtctcttgaccacaattg |
33498963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University