View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9119_low_28 (Length: 363)

Name: NF9119_low_28
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9119_low_28
NF9119_low_28
[»] chr7 (25 HSPs)
chr7 (138-346)||(40322518-40322725)
chr7 (1-126)||(40322403-40322533)
chr7 (179-234)||(40319550-40319605)
chr7 (158-235)||(16957244-16957321)
chr7 (158-237)||(7314232-7314311)
chr7 (158-235)||(17353856-17353933)
chr7 (158-235)||(42337067-42337144)
chr7 (158-234)||(35960185-35960261)
chr7 (159-233)||(42338134-42338208)
chr7 (178-240)||(40658997-40659059)
chr7 (178-236)||(47507757-47507815)
chr7 (159-236)||(46469138-46469215)
chr7 (177-237)||(17352886-17352946)
chr7 (177-233)||(37918523-37918579)
chr7 (178-233)||(7313071-7313126)
chr7 (159-234)||(12384092-12384167)
chr7 (178-235)||(5490924-5490981)
chr7 (156-233)||(8955972-8956049)
chr7 (180-233)||(12385492-12385545)
chr7 (158-223)||(19195442-19195507)
chr7 (158-223)||(20636629-20636694)
chr7 (158-223)||(20638501-20638566)
chr7 (177-234)||(33159483-33159540)
chr7 (160-229)||(38665824-38665893)
chr7 (159-223)||(8526806-8526870)
[»] chr8 (31 HSPs)
chr8 (1-137)||(45518699-45518840)
chr8 (158-235)||(45519473-45519550)
chr8 (158-233)||(23753259-23753334)
chr8 (158-233)||(45020585-45020660)
chr8 (158-234)||(45021630-45021706)
chr8 (158-237)||(39581981-39582060)
chr8 (158-235)||(23754358-23754435)
chr8 (158-235)||(41944353-41944430)
chr8 (158-235)||(44296718-44296795)
chr8 (158-234)||(1192097-1192173)
chr8 (158-233)||(1190969-1191044)
chr8 (159-234)||(45518167-45518242)
chr8 (158-240)||(36985283-36985365)
chr8 (158-235)||(26363578-26363654)
chr8 (158-235)||(26831425-26831502)
chr8 (158-235)||(41774760-41774837)
chr8 (158-244)||(28301332-28301419)
chr8 (180-235)||(28301653-28301708)
chr8 (180-231)||(35562246-35562297)
chr8 (156-235)||(39688340-39688419)
chr8 (180-234)||(14055457-14055511)
chr8 (185-235)||(36984144-36984194)
chr8 (156-234)||(39688966-39689044)
chr8 (183-236)||(14054115-14054168)
chr8 (184-233)||(44297822-44297871)
chr8 (158-234)||(22255573-22255648)
chr8 (177-235)||(10442285-10442343)
chr8 (177-235)||(41767545-41767602)
chr8 (158-235)||(26830323-26830399)
chr8 (158-234)||(6571325-6571401)
chr8 (177-233)||(27300775-27300831)
[»] chr5 (22 HSPs)
chr5 (1-137)||(9071186-9071327)
chr5 (55-137)||(28223146-28223228)
chr5 (158-233)||(28223647-28223721)
chr5 (179-235)||(9072275-9072331)
chr5 (159-235)||(29352488-29352564)
chr5 (158-237)||(2023328-2023407)
chr5 (158-234)||(4533132-4533207)
chr5 (158-234)||(29993322-29993397)
chr5 (159-230)||(9070677-9070747)
chr5 (158-240)||(29353591-29353673)
chr5 (158-235)||(183170-183247)
chr5 (159-235)||(2024280-2024355)
chr5 (158-234)||(12950040-12950116)
chr5 (158-233)||(5015110-5015184)
chr5 (181-235)||(4534068-4534122)
chr5 (158-240)||(38107133-38107215)
chr5 (158-235)||(5014016-5014093)
chr5 (177-224)||(18485147-18485194)
chr5 (158-236)||(12948878-12948956)
chr5 (158-204)||(16793560-16793606)
chr5 (186-240)||(28222692-28222746)
chr5 (158-235)||(16799900-16799976)
[»] chr2 (13 HSPs)
chr2 (158-235)||(27848334-27848411)
chr2 (158-236)||(20126182-20126260)
chr2 (158-240)||(24607762-24607844)
chr2 (158-236)||(27849367-27849444)
chr2 (158-223)||(33076237-33076302)
chr2 (158-226)||(26068898-26068966)
chr2 (158-236)||(42702099-42702177)
chr2 (158-234)||(20127334-20127410)
chr2 (159-234)||(42700949-42701024)
chr2 (177-242)||(12542414-12542479)
chr2 (177-240)||(3454447-3454510)
chr2 (159-234)||(3627614-3627689)
chr2 (158-223)||(30714503-30714568)
[»] chr1 (16 HSPs)
chr1 (158-235)||(31376527-31376604)
chr1 (158-236)||(16276948-16277025)
chr1 (158-239)||(16273724-16273805)
chr1 (160-240)||(22778622-22778702)
chr1 (177-232)||(29183457-29183512)
chr1 (158-233)||(24033136-24033211)
chr1 (177-238)||(1531630-1531691)
chr1 (158-238)||(24037898-24037978)
chr1 (180-234)||(1532578-1532632)
chr1 (158-232)||(5972245-5972318)
chr1 (177-235)||(24032031-24032089)
chr1 (158-240)||(43914900-43914981)
chr1 (158-235)||(5971084-5971161)
chr1 (180-239)||(8052153-8052211)
chr1 (177-235)||(901389-901447)
chr1 (185-239)||(52142863-52142917)
[»] chr6 (13 HSPs)
chr6 (158-233)||(20583957-20584032)
chr6 (177-234)||(15981020-15981077)
chr6 (158-234)||(15976611-15976687)
chr6 (158-234)||(20583016-20583092)
chr6 (159-242)||(14455019-14455102)
chr6 (158-233)||(26444486-26444561)
chr6 (158-236)||(20891803-20891881)
chr6 (158-234)||(14456175-14456250)
chr6 (158-233)||(26444839-26444914)
chr6 (178-238)||(3488029-3488089)
chr6 (185-233)||(3489369-3489417)
chr6 (158-235)||(4370896-4370973)
chr6 (158-223)||(25819695-25819760)
[»] chr4 (25 HSPs)
chr4 (158-233)||(56113738-56113813)
chr4 (158-240)||(56112688-56112770)
chr4 (159-232)||(6047064-6047137)
chr4 (158-242)||(1961153-1961237)
chr4 (158-235)||(1960893-1960970)
chr4 (178-235)||(10614801-10614858)
chr4 (158-234)||(10616071-10616147)
chr4 (159-231)||(52035134-52035206)
chr4 (159-234)||(18705377-18705452)
chr4 (158-231)||(40841995-40842068)
chr4 (158-238)||(18667299-18667379)
chr4 (158-237)||(18703213-18703293)
chr4 (156-235)||(22813268-22813347)
chr4 (158-241)||(34370748-34370831)
chr4 (180-234)||(18704414-18704468)
chr4 (177-228)||(14835585-14835636)
chr4 (180-235)||(34155896-34155951)
chr4 (156-234)||(22812632-22812709)
chr4 (178-236)||(31182614-31182672)
chr4 (177-234)||(1186657-1186714)
chr4 (158-235)||(2419650-2419727)
chr4 (158-223)||(40874039-40874104)
chr4 (181-238)||(49700722-49700779)
chr4 (158-231)||(52034154-52034227)
chr4 (186-234)||(2420981-2421029)
[»] scaffold0446 (1 HSPs)
scaffold0446 (158-240)||(11554-11636)
[»] scaffold0203 (3 HSPs)
scaffold0203 (158-235)||(9560-9637)
scaffold0203 (158-235)||(14934-15011)
scaffold0203 (158-234)||(16088-16164)
[»] chr3 (22 HSPs)
chr3 (159-235)||(52985128-52985204)
chr3 (158-234)||(6247383-6247459)
chr3 (158-234)||(37087112-37087188)
chr3 (158-237)||(40630608-40630687)
chr3 (158-233)||(50297294-50297369)
chr3 (177-239)||(6248455-6248517)
chr3 (158-236)||(50296203-50296281)
chr3 (158-234)||(40630017-40630093)
chr3 (158-234)||(45583239-45583315)
chr3 (158-233)||(2213922-2213997)
chr3 (177-231)||(9434447-9434501)
chr3 (180-234)||(37023813-37023867)
chr3 (177-235)||(45580106-45580164)
chr3 (177-235)||(52986251-52986309)
chr3 (158-239)||(37088142-37088222)
chr3 (158-234)||(38261304-38261380)
chr3 (177-224)||(47614194-47614241)
chr3 (158-235)||(38262323-38262401)
chr3 (158-223)||(8339169-8339234)
chr3 (180-233)||(26127154-26127207)
chr3 (158-223)||(27852980-27853045)
chr3 (179-242)||(37021859-37021923)
[»] scaffold0008 (1 HSPs)
scaffold0008 (158-237)||(268407-268485)
[»] scaffold0827 (1 HSPs)
scaffold0827 (158-233)||(3270-3345)
[»] scaffold0151 (3 HSPs)
scaffold0151 (158-233)||(24806-24881)
scaffold0151 (158-233)||(37323-37398)
scaffold0151 (177-234)||(38365-38422)
[»] scaffold1212 (1 HSPs)
scaffold1212 (185-235)||(2133-2183)
[»] scaffold0010 (1 HSPs)
scaffold0010 (177-238)||(155931-155992)
[»] scaffold0047 (1 HSPs)
scaffold0047 (177-228)||(32419-32470)
[»] scaffold0005 (1 HSPs)
scaffold0005 (177-228)||(4063-4114)
[»] scaffold0050 (1 HSPs)
scaffold0050 (159-235)||(80991-81067)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 138 - 346
Target Start/End: Original strand, 40322518 - 40322725
Alignment:
Q  138 tggtctaattttatgagagtcttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatt 237  Q
    |||||||| ||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40322518 tggtctaagtttatgag---cttttgccatttttatgaatagggggccaaaattgcaacttttacaaagttagagggtaaaaaatgcgtttaagcctatt 40322614  T
Q  238 tttaactgnnnnnnnn--aataaaaataagaaacataaaatgacatggagtcttctctttcacatagattaggggggttcttcaagaaatctatgaatca 335  Q
    ||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40322615 tttaactgttttttttttaataaaaataagaaacataaaatgacatggagtcttctctttcacataggttaggggggttcttcaagaaatctatgaatca 40322714  T
Q  336 tgcattgttga 346  Q
    |||||||||||    
T  40322715 tgcattgttga 40322725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 40322403 - 40322533
Alignment:
Q  1 aaggtgaataattagggttaaggtgaatgataaggcaacaacagttctgcgcata-----gttcgattttggtaaaattttgcagaaatcccaccccaaa 95  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||     ||||||||||||||||||||||||||||| ||||||||||    
T  40322403 aaggtgaataattagggttaaggtgaatgataatgcagcaacagttatgcgcatattaaagttcgattttggtaaaattttgcagaaattccaccccaaa 40322502  T
Q  96 tttgtggatctgggttggtctaagtttatga 126  Q
    |||||||||||||||||||||||||||||||    
T  40322503 tttgtggatctgggttggtctaagtttatga 40322533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 40319605 - 40319550
Alignment:
Q  179 gggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40319605 gggggccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagcct 40319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 16957244 - 16957321
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||    
T  16957244 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagccta 16957321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 7314232 - 7314311
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatt 237  Q
    |||||||||||||| | |  ||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||    
T  7314232 cttttgccattttttttaaaagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgtgtttaagcctatt 7314311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 17353856 - 17353933
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||||||||||||||| ||||||| |||| |||||| ||||||||| ||||||||||||    
T  17353856 cttttgccattttttttaatagggggccaaaattgtaacttttgcaaacttagagagtaaaaagtacgtttaagccta 17353933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 42337144 - 42337067
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | ||||| |||||||||||||||||| |||| |||| |||||||||||| |||||||||||    
T  42337144 cttttgccattttttttaatagggtgccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 42337067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 35960185 - 35960261
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | |||||||| ||||||||||||||| |||| |||| |||||||||||| ||||||||||    
T  35960185 cttttgccattttttttaatagggggctaaaattgcaacttttgcaaaattagggggtaaaaagtgggtttaagcct 35960261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 42338134 - 42338208
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    ||||||||||||| | | |||| ||||||||||||||||||| |||| |||| ||| |||||||| |||||||||    
T  42338134 ttttgccattttttttaataggaggccaaaattgcaacttttgcaaacttagggggcaaaaagtgagtttaagcc 42338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 40659059 - 40658997
Alignment:
Q  178 agggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    ||||||| |||||||||||||||  ||| |||| ||||||||||| ||||||||||| |||||    
T  40659059 agggggcaaaaattgcaacttttgtaaacttagggggtaaaaagtacgtttaagccttttttt 40658997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 47507815 - 47507757
Alignment:
Q  178 agggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    ||||| ||||||||| |||||||||||| |||  ||||||||||| |||||||||||||    
T  47507815 aggggaccaaaattgtaacttttacaaatttaaggggtaaaaagtacgtttaagcctat 47507757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 46469215 - 46469138
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    |||| |||||||| | | |||||||| ||||||||||||||| |||| |||  ||||| |||||| ||||||||||||    
T  46469215 ttttaccattttttttaatagggggctaaaattgcaacttttgcaaacttaaggggtagaaagtgtgtttaagcctat 46469138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 17352946 - 17352886
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatt 237  Q
    ||||| ||||||||| |||||||| |||| |||| || ||||||||| |||||||||||||    
T  17352946 tagggcgccaaaattacaacttttgcaaacttaggggataaaaagtgtgtttaagcctatt 17352886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 37918523 - 37918579
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||| ||||||||||||||| |||| ||| | | |||||||||||||||||||    
T  37918523 tagggggctaaaattgcaacttttgcaaatttaaaagataaaaagtgcgtttaagcc 37918579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 7313126 - 7313071
Alignment:
Q  178 agggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    ||||||||||||||||||||||| |||| |||  ||||||||| || |||||||||    
T  7313126 agggggccaaaattgcaacttttgcaaacttaaggggtaaaaaatgagtttaagcc 7313071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 12384167 - 12384092
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||| | | |||| | |||||||| | |||||| |||| |||| ||||||| |||||||||||||||    
T  12384167 ttttgccattttttttaataggagaccaaaattactacttttgcaaacttagggggtaaatagtgcgtttaagcct 12384092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 5490924 - 5490981
Alignment:
Q  178 agggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||||||||||||  |||  ||| |||| |||||||| ||||||||||    
T  5490924 agggggccaaaattgcaactttttgaaacatagggggtgaaaagtgcatttaagccta 5490981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 8956049 - 8955972
Alignment:
Q  156 gtcttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||| ||||||||| | | |||||||||||||| || ||||||  ||| |||| |||| ||||||| |||||||||    
T  8956049 gtctttggccattttttttaatagggggccaaaatcgctacttttttaaatttagggggtcaaaagtgggtttaagcc 8955972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 12385492 - 12385545
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||  ||||||||  ||| |||| ||||||||||||||||||||||    
T  12385492 ggggccaaaatgtcaacttttgtaaacttagggggtaaaaagtgcgtttaagcc 12385545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 19195442 - 19195507
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | ||||||| |||||||||||| |||  ||| ||||||||| |||||||    
T  19195442 cttttgccattttttttaatagggggtcaaaattgcaacattttaaaacttagagggtgaaaagtg 19195507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 20636694 - 20636629
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | |||||||||||||| ||||| |||  ||| |||||||| ||||||||    
T  20636694 cttttgccattttttttaatagggggccaaaatcgcaacattttaaaacttagagggcaaaaagtg 20636629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 20638566 - 20638501
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | |||||||||||||| ||||| |||  ||| |||||||| ||||||||    
T  20638566 cttttgccattttttttaatagggggccaaaatcgcaacattttaaaacttagagggcaaaaagtg 20638501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 33159540 - 33159483
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| |||||||||| |||| ||| |||| ||||||||  ||||||||    
T  33159540 tagggggccaaaatcgcaacttttaaaaagatagggggttaaaagtgcaattaagcct 33159483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 38665893 - 38665824
Alignment:
Q  160 tttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgttta 229  Q
    |||||| ||||| | | ||||| | ||||||||||||| | |||||||||| |||| |||||||||||||    
T  38665893 tttgcctttttttttaatagggagtcaaaattgcaactatgacaaagttagggggtcaaaagtgcgttta 38665824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 8526870 - 8526806
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    ||||||||||||||| | ||||||| |||||||||||  |||  ||| ||||||||| |||||||    
T  8526870 ttttgccatttttattaatagggggtcaaaattgcaaaattttgaaacttagagggtgaaaagtg 8526806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 45518840 - 45518699
Alignment:
Q  1 aaggtgaataattagggttaaggtgaatgataaggcaacaacagttctgcgcatagt-----tcgattttggtaaaattttgcagaaatcccaccccaaa 95  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||  |||| |     ||||||||||||||||||||||||||| ||||||||||    
T  45518840 aaggtgaataattagggttaaggtgaatgataaggcagtgacagttctgaacatattaaaattcgattttggtaaaattttgcagaaattccaccccaaa 45518741  T
Q  96 tttgtggatctgggttggtctaagtttatgaagattttaaaa 137  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  45518740 tttgtggatccgggttggtctaagtttatgaagattttaaaa 45518699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 45519473 - 45519550
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||||||| |||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45519473 cttttgccaatttttttaatagggggccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagccta 45519550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 23753334 - 23753259
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  23753334 cttttgccattttttttaatagggggccaaaattgcaacttttacaaacttagggggtaaaaagtgtgtttaagcc 23753259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 45020660 - 45020585
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | |||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  45020660 cttttgccattttttttaatagggggcaaaaattgcaacttttgcaaacttagagggtaaaaagtgagtttaagcc 45020585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 45021630 - 45021706
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||| ||||||| | | ||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  45021630 cttttgtcattttttttaatagggggtcaaaattgcaacttttacaaacttagggggtaaaaagtgagtttaagcct 45021706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 39581981 - 39582060
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatt 237  Q
    |||||||||||||| | |  ||||||||||||||||||||||| |||| |||| | |||||||||| |||||||||||||    
T  39581981 cttttgccattttttttaaaagggggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagcctatt 39582060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 23754358 - 23754435
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||| ||||||| | | ||||||||| |||||||||||||| |||| ||||||||| |||||| ||||||||||||    
T  23754358 cttttgtcattttttttaatagggggcccaaattgcaacttttgcaaacttagagggttaaaagtacgtttaagccta 23754435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 41944430 - 41944353
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||| || |||||||||||||||| |||| |||||||||||||||||  ||||||||||    
T  41944430 cttttgccattttttttaataggaggtcaaaattgcaacttttgcaaacttagagggtaaaaagtgaatttaagccta 41944353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 44296795 - 44296718
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | || |||||  |||||||||||||||| |||| |||  ||||||||||||||||||||||||    
T  44296795 cttttgccattttttttagaaggggatcaaaattgcaacttttgcaaacttaaggggtaaaaagtgcgtttaagccta 44296718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 1192097 - 1192173
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | ||||||||||||||||| |||||| |||| ||||||||| ||||||  ||||||||||    
T  1192097 cttttgccattttttttaatagggggccaaaattgctacttttgcaaacttagagggtgaaaagtaggtttaagcct 1192173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 1191044 - 1190969
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | ||||| ||||||||||| |||||| |||| ||||||||| ||||||| |||||||||    
T  1191044 cttttgccattttttttaatagggagccaaaattgctacttttgcaaacttagagggtgaaaagtgagtttaagcc 1190969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 45518242 - 45518167
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||| |||| | | ||||||| |||||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  45518242 ttttgccactttttttaatagggggtcaaaattgcaacttctgcaaagttagaggataaaaagtgtgtttaagcct 45518167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 36985283 - 36985365
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||||||||||| | |  ||||||| ||||||||||||||| |||| ||||||||| ||||||  |||||||||| |||||    
T  36985283 cttttgccattttttttaaaagggggctaaaattgcaacttttgcaaacttagagggtgaaaagtaggtttaagccttttttt 36985365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 26363578 - 26363654
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||||||||||||||||||||| | |||| |||| ||| ||||||||||||| ||||||    
T  26363578 cttttgccatttttttaa-tagggggccaaaattgcaacttctgcaaatttagggggcaaaaagtgcgttttagccta 26363654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 26831425 - 26831502
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||| ||||| | | ||||||||||||||| | |||||| |||| |||| |||||||||||| |||||||||||    
T  26831425 cttttgcctttttttttaatagggggccaaaattactacttttgcaaacttagggggtaaaaagtgtgtttaagccta 26831502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 41774760 - 41774837
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | ||||||| ||||||||| |||||| |||| ||||||||| ||||||  |||||||||||    
T  41774760 cttttgccattttttttaatagggggtcaaaattgctacttttgcaaacttagagggtgaaaagtaggtttaagccta 41774837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 28301419 - 28301332
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat-ttttaact 244  Q
    |||||||||||||| | |  ||||||| ||||||||||||||| ||||  |||  ||||||||||| |||||||||||| ||||||||    
T  28301419 cttttgccattttttttaaaagggggctaaaattgcaactttttcaaacataggaggtaaaaagtgtgtttaagcctatattttaact 28301332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 28301653 - 28301708
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||| ||||||||||||||| |||| ||||  |||||||||||||||||||||||    
T  28301653 ggggctaaaattgcaacttttgcaaacttaggaggtaaaaagtgcgtttaagccta 28301708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 35562297 - 35562246
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaag 231  Q
    |||| |||||||||||||||| |||| ||||||||||||||||| |||||||    
T  35562297 ggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtgtgtttaag 35562246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 39688419 - 39688340
Alignment:
Q  156 gtcttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||| ||||||||| | | |||||| ||||||||||||||||| |||| |||  |||| ||||||| |||||||||||    
T  39688419 gtctttggccattttttttaataggggaccaaaattgcaacttttgcaaacttaaggggtcaaaagtgggtttaagccta 39688340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 14055457 - 14055511
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||||||||||| |||| |||| ||||| |||||| ||||||||||    
T  14055457 ggggccaaaattgcaacttttgcaaacttagggggtagaaagtgtgtttaagcct 14055511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 36984194 - 36984144
Alignment:
Q  185 caaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||||| |||| ||||  |||||||||||||||||||||||    
T  36984194 caaaattgcaacttttgcaaacttagtaggtaaaaagtgcgtttaagccta 36984144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 39688966 - 39689044
Alignment:
Q  156 gtcttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||| ||||| | | ||||||| |||||||||||||||| |||| |||| |||| |||| || ||||||||||    
T  39688966 gtcttttgcctttttttttaatagggggtcaaaattgcaacttttgcaaatttagggggtcaaaaatgggtttaagcct 39689044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 14054168 - 14054115
Alignment:
Q  183 gccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    |||||||||||||||||| |||| ||||  ||||||||||| ||||||||||||    
T  14054168 gccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcctat 14054115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 44297822 - 44297871
Alignment:
Q  184 ccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||||||||||| |||| |||| |||| ||||||||||||    
T  44297822 ccaaaattgcaacttttacaaacttagggggtgaaaaatgcgtttaagcc 44297871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 22255648 - 22255573
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | || ||| ||||||||||||||||| |||| |||| |||  ||||||||||||||||||    
T  22255648 cttttgccatttttttaa-tatgggaccaaaattgcaacttttgcaaacttagggggcgaaaagtgcgtttaagcct 22255573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 10442285 - 10442343
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| ||||||  |||||||||||  ||| ||||||| |||||||||||    
T  10442285 tagggggccaaaatcgcaactagtacaaagttaggaggttaaaagtgtgtttaagccta 10442343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 41767602 - 41767545
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||||||||||||||| |||||| |||| ||||| ||| ||||||| |||||||||||    
T  41767602 tagggggccaaaattgctacttttgcaaacttaga-ggtgaaaagtgagtttaagccta 41767545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 26830399 - 26830323
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | ||||||| ||||||||| || ||| ||||  ||| |||||||||||| |||||||||||    
T  26830399 cttttgccatttttttaa-tagggggtcaaaattgctacgtttgcaaacctagggggtaaaaagtgtgtttaagccta 26830323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 6571401 - 6571325
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | |||||   |||||||||||||||| |||| |||  || ||||||||| ||||||||||    
T  6571401 cttttgccattttttttaatagggaatcaaaattgcaacttttgcaaacttaagggataaaaagtgagtttaagcct 6571325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 27300775 - 27300831
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    ||||||||||||||| ||||||||| |||| |||||| | ||||||||  |||||||    
T  27300775 tagggggccaaaattacaacttttaaaaagatagaggatcaaaagtgcaattaagcc 27300831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9071327 - 9071186
Alignment:
Q  1 aaggtgaataattagggttaaggtgaatgataaggcaacaacagttctgcgcata-----gttcgattttggtaaaattttgcagaaatcccaccccaaa 95  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||  ||||     ||||||||||||||||||||||||||||||||||||||||    
T  9071327 aaggtgaataattagggttaaggtgaatgataaggcagcgacagttctgaacatattaaagttcgattttggtaaaattttgcagaaatcccaccccaaa 9071228  T
Q  96 tttgtggatctgggttggtctaagtttatgaagattttaaaa 137  Q
    ||||| | | ||||||||| ||||||||||||||||||||||    
T  9071227 tttgtaggtatgggttggtgtaagtttatgaagattttaaaa 9071186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 28223146 - 28223228
Alignment:
Q  55 agttcgattttggtaaaattttgcagaaatcccaccccaaatttgtggatctgggttggtctaagtttatgaagattttaaaa 137  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||    
T  28223146 agttcgattttggtaaaattttgcagaaatcccacctcaaatttctggatctgggttgctttaagtttatgaagattttaaaa 28223228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 28223647 - 28223721
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  28223647 cttttgccatttttttaa-tagggggccaaaattgcaacttttgcaaagttagaggataaaaagtgagtttaagcc 28223721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 9072275 - 9072331
Alignment:
Q  179 gggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  9072275 gggggtcaaaattgcaacttttgcaaagttagagggtaagaagtgcgtttaagccta 9072331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 29352564 - 29352488
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||||||||||| | | ||||||||||||||||| |||||| |||| ||||||||| ||||||| |||||||||||    
T  29352564 ttttgccattttttttaatagggggccaaaattgctacttttgcaaatttagagggtgaaaagtgggtttaagccta 29352488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 2023407 - 2023328
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatt 237  Q
    |||||||||||||| | | ||||||||||||||||||||||||  ||| |||| ||||||| |||| |||||||||||||    
T  2023407 cttttgccattttttttaatagggggccaaaattgcaacttttgtaaacttagggggtaaatagtgggtttaagcctatt 2023328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 4533207 - 4533132
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | |||||| ||||||||||||||||| |||| |||| |||||||||||| ||||||||||    
T  4533207 cttttgccattttttttaatagggg-ccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 4533132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 29993397 - 29993322
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | ||||| ||||||||| |||||||| |||| ||||||||| ||||||||||||||||||    
T  29993397 cttttgccatttttttaa-tagggtgccaaaattacaacttttgcaaacttagagggttaaaagtgcgtttaagcct 29993322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 9070747 - 9070677
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaa 230  Q
    ||||||||||||| | | |||||| |||||||| |||||||| |||| ||||||||||||||||||||||||    
T  9070747 ttttgccattttttttaatagggg-ccaaaattacaacttttgcaaaattagagggtaaaaagtgcgtttaa 9070677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 29353591 - 29353673
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||||||||||| | | |||||| |||||||||| |||||| |||| ||||||||| ||||||  |||||||||| |||||    
T  29353591 cttttgccattttttttaataggggaccaaaattgctacttttgcaaacttagagggtgaaaagtaggtttaagccttttttt 29353673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 183170 - 183247
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||  ||| |||||| |||||| ||||||    
T  183170 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttaaggggcaaaaagcgcgttttagccta 183247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 2024280 - 2024355
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||||||||||| | | ||||||  |||||||||||||||| |||| |||| |||||||||||| |||||||||||    
T  2024280 ttttgccatttttttaa-taggggaacaaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagccta 2024355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 12950040 - 12950116
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | |||||| ||| ||||||||||||| |||| |||| ||| ||||||||||||| |||||    
T  12950040 cttttgccattttttttaataggggaccataattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 12950116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 5015110 - 5015184
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | |||||| |||||||||||||||||||||| |||  || ||||||||| |||||||||    
T  5015110 cttttgccattttttttaatagggg-ccaaaattgcaacttttacaaacttaagggttaaaaagtgagtttaagcc 5015184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 4534068 - 4534122
Alignment:
Q  181 gggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||||||||| |||| |||| ||||||||||||  ||||||||||    
T  4534068 gggccaaaattgcaacttttgcaaacttagggggtaaaaagtgaatttaagccta 4534122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 38107215 - 38107133
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||||||||||| | | ||||||| ||||||||||| |||| |||| ||||  |||||||||||  ||||||||| |||||    
T  38107215 cttttgccattttttttaatagggggtcaaaattgcaatttttgcaaacttaggaggtaaaaagtggatttaagccttttttt 38107133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 5014093 - 5014016
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||| | |||||||| |||||||| |||| ||| ||||||||||||  |||||||||||    
T  5014093 cttttgccattttttttaataggagaccaaaattacaacttttgcaaacttaaagggtaaaaagtaggtttaagccta 5014016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 18485194 - 18485147
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgc 224  Q
    ||||||||||||||||||| ||||  |||||||||||| |||||||||    
T  18485194 tagggggccaaaattgcaagttttttaaagttagaggggaaaaagtgc 18485147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 12948956 - 12948878
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    ||||| |||||||| | | |||||||||||||||||||| |||  ||| |||  || ||||||||||| ||||||||||    
T  12948956 cttttaccattttttttaatagggggccaaaattgcaacctttgtaaacttaagggataaaaagtgcgcttaagcctat 12948878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 16793606 - 16793560
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaa 204  Q
    |||||||||||||| | | |||| |||||||||||||||||||||||    
T  16793606 cttttgccattttttttaataggaggccaaaattgcaacttttacaa 16793560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 28222746 - 28222692
Alignment:
Q  186 aaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||||||||||||||||| ||||| |||||||| | ||||||| ||| |||||    
T  28222746 aaaattgcaacttttacaaaattagaaggtaaaaaatacgtttaaaccttttttt 28222692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 16799900 - 16799976
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | ||||||| |||||||||||||||| |||| |||  ||  |||||||| |||||||||||    
T  16799900 cttttgccatttttttaa-tagggggtcaaaattgcaacttttgcaaacttaagggacaaaaagtgggtttaagccta 16799976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 27848411 - 27848334
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||    
T  27848411 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 27848334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 20126260 - 20126182
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| ||| ||||||||||||| |||||||    
T  20126260 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcctat 20126182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 24607762 - 24607844
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||||||||||| | | |||||||||||||||||||| ||| |||| |||| ||| |||||||| |||| |||||||||||    
T  24607762 cttttgccattttttttaatagggggccaaaattgcaacctttgcaaacttagggggcaaaaagtgtgttttagcctattttt 24607844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 27849367 - 27849444
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    |||||||||||||| | | |||||||| |||||||||||||||||||| ||||  ||||||||||| ||||||||||||    
T  27849367 cttttgccatttttttaa-tagggggctaaaattgcaacttttacaaacttaggaggtaaaaagtgagtttaagcctat 27849444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 33076237 - 33076302
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| ||||||||||||    
T  33076237 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 33076302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 26068966 - 26068898
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgt 226  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||  |||||||||||||||    
T  26068966 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttaaggggtaaaaagtgcgt 26068898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 42702099 - 42702177
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    |||||||||||||| | | |||||| ||||||||||||| |||  ||| |||  |||||||||||||||||||||||||    
T  42702099 cttttgccattttttttaataggggaccaaaattgcaacctttgtaaacttaaggggtaaaaagtgcgtttaagcctat 42702177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 20127334 - 20127410
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | |||||||||||||||||||| |||  ||| |||  ||||||||||||| |||||||||    
T  20127334 cttttgccattttttttaatagggggccaaaattgcaacctttgtaaacttaaggggtaaaaagtgcatttaagcct 20127410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 42701024 - 42700949
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||| | | ||||||| |||||||||||| ||| |||| |||| |||||||||||  ||||||||||    
T  42701024 ttttgccattttttttaatagggggtcaaaattgcaacctttgcaaacttagggggtaaaaagtttgtttaagcct 42700949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 12542414 - 12542479
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatttttaa 242  Q
    |||||||||||||| |||||||||  |||| |||||||  ||||||||  ||||||||||||||||    
T  12542414 tagggggccaaaatcgcaacttttgaaaagatagagggccaaaagtgcaattaagcctatttttaa 12542479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 3454447 - 3454510
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    ||||||||||||||| |||||||| |||| |||| ||| |||| |||||||| ||||| |||||    
T  3454447 tagggggccaaaattacaacttttgcaaacttagggggcaaaaggtgcgttttagccttttttt 3454510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 3627689 - 3627614
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||| | | || | || |||||||||||||||| |||| |||  |||||||||||| ||||||||||    
T  3627689 ttttgccattttttttattaagaggtcaaaattgcaacttttgcaaacttaaggggtaaaaagtgtgtttaagcct 3627614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 30714503 - 30714568
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | |||||||||||||||||||| |||  ||| ||||||||  |||||||    
T  30714503 cttttgccattttttttaatagggggccaaaattgcaacattttaaaatttagagggcgaaaagtg 30714568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 31376604 - 31376527
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | |  ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  31376604 cttttgccattttttttaaaagggggccaaaattgcaacttttgcaaacttagagggtgaaaagtgcgtttaagccta 31376527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 16276948 - 16277025
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||    
T  16276948 cttttgccatttttttaa-tagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctat 16277025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 16273805 - 16273724
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatttt 239  Q
    |||||||||||||| | | ||||||| |||||||||||||||| |||| |||  |||||||||||| |||||||||||||||    
T  16273805 cttttgccattttttttaatagggggtcaaaattgcaacttttgcaaacttatggggtaaaaagtgagtttaagcctatttt 16273724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 22778622 - 22778702
Alignment:
Q  160 tttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||| ||||| | | |||||||||||||||||||||||| |||| |||| ||||||||||||  |||||||||||||||    
T  22778622 tttgcctttttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtggatttaagcctattttt 22778702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 29183457 - 29183512
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagc 232  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  29183457 tagggggccaaaattgcaactttttcaaacttagagggtaaaaagtgtgtttaagc 29183512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 24033136 - 24033211
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | ||||||||||||||||| |||||| |||| ||||||||| ||||||  |||||||||    
T  24033136 cttttgccattttttttaatagggggccaaaattgctacttttgcaaacttagagggtgaaaagtaggtttaagcc 24033211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 1531691 - 1531630
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattt 238  Q
    ||||||| |||||||||||||||| |||| |||| | |||||||||| ||||||||||||||    
T  1531691 tagggggtcaaaattgcaacttttgcaaacttagggagtaaaaagtgagtttaagcctattt 1531630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 24037978 - 24037898
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattt 238  Q
    |||||||||||||| | |  |||||| |||||||||||||||| |||| |||  || ||||||||| ||||||||||||||    
T  24037978 cttttgccattttttttaaaagggggtcaaaattgcaacttttgcaaacttaagggataaaaagtgagtttaagcctattt 24037898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 1532578 - 1532632
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||||||||| | |||| |||| |||||||||||| ||||||||||    
T  1532578 ggggccaaaattgcaacttctgcaaacttagggggtaaaaagtgggtttaagcct 1532632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 5972245 - 5972318
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagc 232  Q
    |||||||||||||| | | |||||||||||||||||||| |||  ||| ||| |||||||||||||| |||||||    
T  5972245 cttttgccattttttttaatagggggccaaaattgcaacctttgtaaactta-agggtaaaaagtgcatttaagc 5972318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 24032089 - 24032031
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||| |||||||||||| |||||| |||| ||||||||| ||||||| |||||||||||    
T  24032089 taggtggccaaaattgctacttttgcaaacttagagggtgaaaagtgggtttaagccta 24032031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 43914981 - 43914900
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||||||||||| | | |||||||||||||||||||| ||| |||| |||| |||  ||||||||||||||| ||| ||||    
T  43914981 cttttgccatttttttaa-tagggggccaaaattgcaacctttgcaaacttagggggcgaaaagtgcgtttaagtctaatttt 43914900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 5971161 - 5971084
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||| ||||| | | |||||||| ||||||||||||||| |||| |||| ||| ||||||||| ||| ||||||    
T  5971161 cttttgcctttttttttaatagggggctaaaattgcaacttttgcaaacttagggggcaaaaagtgcattttagccta 5971084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 8052153 - 8052211
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatttt 239  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||  ||||||||| ||||    
T  8052153 ggggtcaaaattgcaacttttacaaatttaga-ggtaaaaagtgaatttaagcctttttt 8052211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 901389 - 901447
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| ||||||  | |||| ||||| ||| |||||||||||||||||||    
T  901389 tagggggccaaaatcgcaactagtgcaaatttagaaggtcaaaagtgcgtttaagccta 901447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 52142917 - 52142863
Alignment:
Q  185 caaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatttt 239  Q
    |||||||  |||||||||||| |||| |||||||||||  |||||||||||||||    
T  52142917 caaaattataacttttacaaacttagggggtaaaaagtatgtttaagcctatttt 52142863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 20583957 - 20584032
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | ||||||| |||||||||||||||| |||| |||||||||||||||| ||||||||||    
T  20583957 cttttgccattttttttaatagggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtacgtttaagcc 20584032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 15981020 - 15981077
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||    
T  15981020 tagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 15981077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 15976687 - 15976611
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | ||||| | |||||||||||||||| |||| |||| |||||||||||| ||||||||||    
T  15976687 cttttgccattttttttaatagggtgtcaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 15976611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 20583092 - 20583016
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | ||||||| |||||||||||||||| |||| |||| || ||||||||| ||||||||||    
T  20583092 cttttgccattttttttaatagggggtcaaaattgcaacttttccaaacttaggggataaaaagtgtgtttaagcct 20583016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 14455102 - 14455019
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatttttaa 242  Q
    ||||||||||||| | | ||||||||||||||||| ||||||| ||| |||| || |||| ||||||||||| |||||| ||||    
T  14455102 ttttgccattttttttaatagggggccaaaattgctacttttagaaacttaggggataaatagtgcgtttaaacctattattaa 14455019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 26444561 - 26444486
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | ||||||||||||||||| |||||| |||| ||||||||| ||||||  |||||||||    
T  26444561 cttttgccattttttttaatagggggccaaaattgctacttttgcaaacttagagggtgaaaagtaggtttaagcc 26444486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 20891881 - 20891803
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    |||||||||||||| | | |||||||||||||||||||||| | |||| |||| ||| |||||||| |||| |||||||    
T  20891881 cttttgccattttttttaatagggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgtgttttagcctat 20891803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 14456175 - 14456250
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | |||||| ||||||||| ||||||| |||| || | |||||||||||||||||||||||    
T  14456175 cttttgccattttttttaatagggg-ccaaaattgtaacttttgcaaactttgggggtaaaaagtgcgtttaagcct 14456250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 26444839 - 26444914
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | |||||||  |||||||| |||||| |||| ||||||||| ||||||| |||||||||    
T  26444839 cttttgccattttttttaatagggggttaaaattgctacttttgcaaacttagagggtgaaaagtgggtttaagcc 26444914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 3488089 - 3488029
Alignment:
Q  178 agggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattt 238  Q
    ||||| |||||||| | |||||| |||| |||| || ||||||||||||||||||||||||    
T  3488089 aggggaccaaaatttctacttttgcaaacttaggggataaaaagtgcgtttaagcctattt 3488029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 3489369 - 3489417
Alignment:
Q  185 caaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    ||||||| | ||||||||||| |||| ||||||||||||||||||||||    
T  3489369 caaaattcctacttttacaaacttagggggtaaaaagtgcgtttaagcc 3489417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 4370973 - 4370896
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | |  ||| ||||||||| || |||||| |||| |||| |||| || ||||||||||||||||    
T  4370973 cttttgccattttttttaaaaggaggccaaaatcgctacttttgcaaacttagggggtgaatagtgcgtttaagccta 4370896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 25819760 - 25819695
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | |||||||||||||||||||| |||  ||| ||||||||  |||||||    
T  25819760 cttttgccattttttttaatagggggccaaaattgcaacattttaaaacttagagggcgaaaagtg 25819695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 56113738 - 56113813
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||    
T  56113738 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcc 56113813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 56112770 - 56112688
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||||||||||| | | |||||||| ||||||||||||||| |||| |||| |||||||||||| ||||||||||| ||||    
T  56112770 cttttgccattttttttaatagggggctaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctactttt 56112688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 6047137 - 6047064
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagc 232  Q
    ||||||||||||| | | |||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||    
T  6047137 ttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagc 6047064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 1961153 - 1961237
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatttttaa 242  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| |||||||||||||  || |||||| ||||||    
T  1961153 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcactttagcctaattttaa 1961237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 1960970 - 1960893
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | ||||| |||||||||||||||||| |||| |||  ||||||||||||||||| ||||||    
T  1960970 cttttgccattttttttaatagggtgccaaaattgcaacttttgcaaacttaatgggtaaaaagtgcgttttagccta 1960893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 10614858 - 10614801
Alignment:
Q  178 agggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||||    
T  10614858 agggggccaaaattgcaacttttgcaaacttagagggcaaaatgtgcgtttaagccta 10614801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 10616071 - 10616147
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | ||||||| |||||||||||||||| |||| |||| ||||| |||||| ||||||||||    
T  10616071 cttttgccattttttttaatagggggtcaaaattgcaacttttgcaaatttagggggtagaaagtgtgtttaagcct 10616147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 52035134 - 52035206
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaag 231  Q
    ||||||||||||| | | |||||||||||||||||||||||| |||| |||  |||||||||||| |||||||    
T  52035134 ttttgccattttttttaatagggggccaaaattgcaacttttgcaaatttaaggggtaaaaagtgggtttaag 52035206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 18705377 - 18705452
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||| | | ||||||| ||||||||| |||||| |||| |||| ||||||| |||||||||||||||    
T  18705377 ttttgccattttttttaatagggggtcaaaattgctacttttgcaaacttagggggtaaatagtgcgtttaagcct 18705452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 40842068 - 40841995
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaag 231  Q
    |||||||||||||| | |  ||||| ||||||||||||||||| |||| ||||||||| ||||||| |||||||    
T  40842068 cttttgccattttttttaaaaggggaccaaaattgcaacttttgcaaacttagagggtgaaaagtgtgtttaag 40841995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 18667299 - 18667379
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattt 238  Q
    |||||||||||||| | |  ||||||||||||||||||||||| ||||  || ||||||||||||  ||||||||| ||||    
T  18667299 cttttgccattttttttaaaagggggccaaaattgcaacttttgcaaacataaagggtaaaaagtatgtttaagccaattt 18667379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 18703293 - 18703213
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagtta-gagggtaaaaagtgcgtttaagcctatt 237  Q
    |||||||||||||| | | ||| |||||||||||||||| ||| |||| ||| | |||||||||||| |||||||||||||    
T  18703293 cttttgccattttttttaatagagggccaaaattgcaacgtttgcaaacttaggggggtaaaaagtgtgtttaagcctatt 18703213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 22813268 - 22813347
Alignment:
Q  156 gtcttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||||| | | |||||| ||||||||||||||||| |||| |||   ||| ||||||| |||||||||||    
T  22813268 gtcttttgccattttttttaataggggaccaaaattgcaacttttgcaaacttaagaggtcaaaagtgggtttaagccta 22813347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 34370748 - 34370831
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttta 241  Q
    ||||||||| |||| | | || |||||||||||||||||||||  ||| |||| ||| |||| |||||||| ||||||||||||    
T  34370748 cttttgccaatttttttaataaggggccaaaattgcaacttttgtaaacttagggggcaaaaggtgcgttttagcctattttta 34370831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 18704414 - 18704468
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| |||||| |||| |||| ||||||| |||||||||||||||    
T  18704414 ggggccaaaattgctacttttgcaaaattagggggtaaatagtgcgtttaagcct 18704468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 14835585 - 14835636
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgttt 228  Q
    |||||||||||||| |||||||||| |||||||| |||| || |||||||||    
T  14835585 tagggggccaaaatcgcaacttttataaagttagggggtcaagagtgcgttt 14835636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 34155951 - 34155896
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||| |||||||||||||||  ||| |||| |||||||||||| |||||||||||    
T  34155951 ggggctaaaattgcaacttttgtaaacttagggggtaaaaagtgtgtttaagccta 34155896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 22812709 - 22812632
Alignment:
Q  156 gtcttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||||| | | ||||||  |||||||||||||||| |||| |||  |||| ||||||| ||||||||||    
T  22812709 gtcttttgccatttttttaa-taggggatcaaaattgcaacttttgcaaacttaaggggtcaaaagtgggtttaagcct 22812632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 31182672 - 31182614
Alignment:
Q  178 agggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    ||||| |||||||| ||||||||||||| |||| || ||||||||| |||||| |||||    
T  31182672 aggggaccaaaattacaacttttacaaacttaggggttaaaaagtgtgtttaaacctat 31182614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 1186714 - 1186657
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| |||||||||| |||||||| |||  ||||||||  ||||||||    
T  1186714 tagggggccaaaatcgcaacttttaaaaagttagggggccaaaagtgcaattaagcct 1186657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 2419727 - 2419650
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||||| |||||| | | |||||||| ||||||| ||||||| |||| |||||| | ||||  ||||||||||||||    
T  2419727 cttttgctattttttttaatagggggcaaaaattgtaacttttgcaaacttagagagcaaaatttgcgtttaagccta 2419650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 40874039 - 40874104
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | ||||  |||||||||||||||||| |||| |||| |||| |||||||    
T  40874039 cttttgccattttttttaataggtagccaaaattgcaacttttgcaaacttagggggtgaaaagtg 40874104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 49700722 - 49700779
Alignment:
Q  181 gggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattt 238  Q
    |||| ||||||||||||||| ||||  ||| |||||||||||| ||||||||| ||||    
T  49700722 gggctaaaattgcaacttttgcaaacatagggggtaaaaagtgtgtttaagccaattt 49700779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 52034227 - 52034154
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaag 231  Q
    |||||| ||||||| | | |||||||||||||||||| ||||| |||| |||  || ||||||||| |||||||    
T  52034227 cttttgtcattttttttaatagggggccaaaattgcagcttttgcaaacttaagggataaaaagtgggtttaag 52034154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 2420981 - 2421029
Alignment:
Q  186 aaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||||| |||| ||| |||||| |||||| ||||||||||    
T  2420981 aaaattgcaacttttgcaaacttaaagggtagaaagtgtgtttaagcct 2421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 11636 - 11554
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattttt 240  Q
    |||||||||||||| | | |||||||| ||||||||||||||| |||| |||| |||||||||||| ||||||||||| ||||    
T  11636 cttttgccattttttttaatagggggctaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctactttt 11554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 9637 - 9560
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| ||| ||||||||||||| ||||||    
T  9637 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagccta 9560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 15011 - 14934
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||| ||| ||||||||||||| ||||||    
T  15011 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagccta 14934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 16088 - 16164
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | | |||||||||||||||||| |||  ||| |||  |||||||||||||||||||||||    
T  16088 cttttgccattttttttaattgggggccaaaattgcaacctttgtaaacttaaggggtaaaaagtgcgtttaagcct 16164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 52985204 - 52985128
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||| |||||||| | | |||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  52985204 ttttaccattttttttaataggggaccaaaattgtaacttttacaaacttagagggtaaaaagtgtgtttaagccta 52985128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 6247459 - 6247383
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | ||||||| |||||||||||||||| |||| |||| ||| ||||||||||||| |||||    
T  6247459 cttttgccattttttttaatagggggtcaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 6247383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 37087188 - 37087112
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||||   | ||||| |||||||||||||||||| |||| |||| |||||||||||| ||||||||||    
T  37087188 cttttgccattttttctaatagggtgccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 37087112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 40630608 - 40630687
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatt 237  Q
    ||||||| |||||| | | |||||||||||||||||||||||| |||| |||| |||||||||||||  || ||||||||    
T  40630608 cttttgctattttttttaatagggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcactttagcctatt 40630687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 50297294 - 50297369
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | || ||||||||||||||||||||| |||| |||| ||| ||||||||||||| ||||    
T  50297294 cttttgccattttttttaataaggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcc 50297369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 6248455 - 6248517
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatttt 239  Q
    |||||||||||||||||||||||| |||| |||| ||| ||||||||||||| ||||| ||||    
T  6248455 tagggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcctttttt 6248517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 50296281 - 50296203
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctat 236  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||  ||| ||||||||| ||| |||||||    
T  50296281 cttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttaaggggcaaaaagtgcattttagcctat 50296203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 40630093 - 40630017
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | || || |||||||||||||||||| |||| |||  ||||||||||||||||| |||||    
T  40630093 cttttgccattttttttaataaggtgccaaaattgcaacttttgcaaacttaatgggtaaaaagtgcgttttagcct 40630017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 45583239 - 45583315
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||| |||||||| | | |||||||||||||||||||||||| |||| |||| || || |||||| ||||||||||    
T  45583239 cttttaccattttttttaatagggggccaaaattgcaacttttgcaaacttaggggttagaaagtgtgtttaagcct 45583315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 2213997 - 2213922
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | ||||||| ||||||||||||||||  ||| |||| |||| ||||||| |||||||||    
T  2213997 cttttgccattttttttaatagggggtcaaaattgcaacttttgaaaacttagggggtcaaaagtgggtttaagcc 2213922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 9434501 - 9434447
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaag 231  Q
    ||||||||||||||||| |||||| |||| ||||||||| ||||||| |||||||    
T  9434501 tagggggccaaaattgctacttttgcaaacttagagggtgaaaagtgggtttaag 9434447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 37023813 - 37023867
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    ||||||||||||||||||||| |||| ||||  ||||||||||| ||||||||||    
T  37023813 ggggccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcct 37023867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 45580164 - 45580106
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||| ||||||||||||||||||| |||| |||| | |||||||||| |||||||||||    
T  45580164 taggaggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagccta 45580106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 52986251 - 52986309
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||||| |||||||| |||||||||||| |||| | |||||||||| |||||||||||    
T  52986251 tagggggtcaaaattgtaacttttacaaacttagggagtaaaaagtgtgtttaagccta 52986309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 37088142 - 37088222
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatttt 239  Q
    |||||||||||||| | | |||||||  ||| ||||||||||| |||| |||| ||||||||||||  ||||||||||||||    
T  37088142 cttttgccatttttttaa-tagggggtaaaatttgcaacttttgcaaacttagggggtaaaaagtgaatttaagcctatttt 37088222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 38261380 - 38261304
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||| | | |||| ||||||||||||||||| | |||| |||| ||  ||||||||||||| |||||    
T  38261380 cttttgccattttttttaataggtggccaaaattgcaacttctgcaaacttaggggacaaaaagtgcgttttagcct 38261304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 47614241 - 47614194
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgc 224  Q
    ||||||||||||||||||| ||||  |||||||||||| |||||||||    
T  47614241 tagggggccaaaattgcaagtttttgaaagttagaggggaaaaagtgc 47614194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 38262323 - 38262401
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagaggg-taaaaagtgcgtttaagccta 235  Q
    |||||||| ||||| | | |||||||||||||||||||||| | |||| |||| |||  ||||||||||||| ||||||    
T  38262323 cttttgcctttttttttaatagggggccaaaattgcaacttctgcaaacttagggggcaaaaaagtgcgttttagccta 38262401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 8339169 - 8339234
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | |||||||||||||||||||| |||  ||| ||||||||  |||||||    
T  8339169 cttttgccattttttttaatagggggccaaaattgcaacattttgaaacttagagggcgaaaagtg 8339234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 26127154 - 26127207
Alignment:
Q  180 ggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    ||||||||||| || |||||| |||| ||||||||| || ||||||||||||||    
T  26127154 ggggccaaaatcgctacttttgcaaacttagagggtgaatagtgcgtttaagcc 26127207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 27852980 - 27853045
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtg 223  Q
    |||||||||||||| | | |||||||||||||||||||| |||  ||| ||||||||  |||||||    
T  27852980 cttttgccattttttttaatagggggccaaaattgcaacattttgaaacttagagggcgaaaagtg 27853045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 37021923 - 37021859
Alignment:
Q  179 gggggccaaaattgcaacttttacaaagttagagggta-aaaagtgcgtttaagcctatttttaa 242  Q
    |||||| ||||||||||||||| |||| ||||||| ||  | ||||||||||| |||||||||||    
T  37021923 gggggctaaaattgcaacttttgcaaacttagaggataggagagtgcgtttaaacctatttttaa 37021859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 268485 - 268407
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctatt 237  Q
    |||||||||||||| | | |||||||||||||||||||||||| |||| |||   |||||||||||||||| ||||||||    
T  268485 cttttgccatttttttaa-tagggggccaaaattgcaacttttgcaaacttaagaggtaaaaagtgcgttttagcctatt 268407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0827 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 3270 - 3345
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||  | | ||||||| |||||||||||||||| |||| |||| | ||||||||||||||| ||||    
T  3270 cttttgccattttctttaatagggggtcaaaattgcaacttttgcaaacttagcgtgtaaaaagtgcgttttagcc 3345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 24881 - 24806
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | |||||||||||||||||||||| | |||| |||| ||| ||||||| ||||| ||||    
T  24881 cttttgccattttttttaatagggggccaaaattgcaacttctgcaaacttagggggcaaaaagtacgttttagcc 24806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 37398 - 37323
Alignment:
Q  158 cttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcc 233  Q
    |||||||||||||| | | |||||||||||||||||||||| | |||| |||| ||| ||||||| ||||| ||||    
T  37398 cttttgccattttttttaatagggggccaaaattgcaacttctgcaaacttagggggcaaaaagtacgttttagcc 37323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 38365 - 38422
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcct 234  Q
    |||||||||||||||||||||| | |||| |||  ||| ||||||||||||| |||||    
T  38365 tagggggccaaaattgcaacttctgcaaacttaaggggcaaaaagtgcgttttagcct 38422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 2183 - 2133
Alignment:
Q  185 caaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    |||||||||||||||| |||| |||| ||||||||||||||||| ||||||    
T  2183 caaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagccta 2133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 155992 - 155931
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagcctattt 238  Q
    |||||||||||||| || | ||||  |||||||| |||| ||||||||||||||||||||||    
T  155992 tagggggccaaaatcgctattttttaaaagttagggggtcaaaagtgcgtttaagcctattt 155931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 32419 - 32470
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgttt 228  Q
    |||||||||||||| |||||||||| |||||||| |||| || |||||||||    
T  32419 tagggggccaaaatcgcaacttttataaagttagggggtcaagagtgcgttt 32470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 4114 - 4063
Alignment:
Q  177 tagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgttt 228  Q
    |||||||||||||| |||||||||| |||||||| |||| || |||||||||    
T  4114 tagggggccaaaatcgcaacttttataaagttagggggtcaagagtgcgttt 4063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 80991 - 81067
Alignment:
Q  159 ttttgccatttttatgagtagggggccaaaattgcaacttttacaaagttagagggtaaaaagtgcgtttaagccta 235  Q
    ||||||||||||| | |  |||||| |||||| || |||||| |||| |||| |||| || ||||||||||||||||    
T  80991 ttttgccatttttttaaaaagggggtcaaaatcgctacttttgcaaacttagggggtgaatagtgcgtttaagccta 81067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University