View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9119_low_30 (Length: 362)
Name: NF9119_low_30
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 55363229 - 55362928
Alignment:
| Q |
1 |
tattaattctttgattgtcttgtctttgaaaaattatgagtagatgttttgtcttggttgggatttagatgagcaatgacaaataattgtttcgatcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55363229 |
tattaattctttgattgtcttgtctttggaaaattatgagtagatgttttgtcttggttgggatttagatgagcaatgacaaataattgtttcggtcatg |
55363130 |
T |
|
| Q |
101 |
tcgttcaattcacatattttggtttctcgtagaaagaaaggaaatgaatactttacgcaatttggttggcatgtgtatgatcaatataaaatcatcgtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55363129 |
tcgttcaattcacatattttggtttctcgtagaaagaaaggaaatgaatactttacgcaatttggttggcatgtgtatgatcaatataaaatcatcgtaa |
55363030 |
T |
|
| Q |
201 |
ttacgcggtgtttgatcaacctaattgtttaactagttcttctttggattcagtaaaattgttggaatagtcatagatgaaatccaaaaataaagctttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55363029 |
ttacgcggtgtttgatcaacctaattgcttaactagttcttctttggattgaataaaattgttggaatagtcatagatgaaatccaaaaataaagctttt |
55362930 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
|
|
| T |
55362929 |
tc |
55362928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 55361492 - 55361169
Alignment:
| Q |
4 |
taattctttgattgtcttgtctttgaaaaattatgagtagatgttttgtcttggttgggatttagatgagcaatgacaaataattgtttcgatcatgtcg |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
55361492 |
taattctttcattgtcttgtctttgaaaaagtatgggtagatgttttatcttcgttgggatttagatgtgcaatgataaataattgtttggatcatgtcg |
55361393 |
T |
|
| Q |
104 |
ttcaattcacatattttggtttctcgtagaaagaaaggaaatgaatactttacgcaatttggttggcatgtgtatgatcaatataaaatcatcgtaatta |
203 |
Q |
| |
|
|| ||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55361392 |
ttaaattcacatatttag-tttctcatagaaataaaggaaatgaatactttacgcaatttggttagcatgtgtatgatcaatataaaaccatcgtaatta |
55361294 |
T |
|
| Q |
204 |
cgcggtgtttgatcaacctaattgtttaactagttcttctttggattcagtaaaattgttggaatagtcatagatgaaatccaaaaataaagc-tttttc |
302 |
Q |
| |
|
|| | |||| ||||| | ||||||||||| ||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||||| | |||||| |
|
|
| T |
55361293 |
tgcattatttggtcaacgtgattgtttaacttgttcttctttggatttagtaaaattgctggaatagtcataaataaaatccaaaaataaaccttttttc |
55361194 |
T |
|
| Q |
303 |
atatgatttatataatggagtactc |
327 |
Q |
| |
|
|||||||||||| ||||||| |||| |
|
|
| T |
55361193 |
atatgatttatacaatggagcactc |
55361169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 21464186 - 21464318
Alignment:
| Q |
6 |
attctttgattgtcttgtctttgaaaaattatgagtagatgttttgtcttggttgggatttagatgagcaatgacaaataattgtttcgatcatgtcgtt |
105 |
Q |
| |
|
||||||||| ||||| ||| ||| |||||| || | |||||| || |||||| || ||||||| ||||| |||||||||||||| |||||||| || |
|
|
| T |
21464186 |
attctttgactgtctagtccttgtaaaattttggatgtatgtttcatcctggttgagaattagatgtgcaataacaaataattgttttgatcatgtggtc |
21464285 |
T |
|
| Q |
106 |
caattcacatattttggtttctcgtagaaagaaa |
139 |
Q |
| |
|
||||||||| | | ||||||||| | |||||||| |
|
|
| T |
21464286 |
caattcaca-agtatggtttctcatggaaagaaa |
21464318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 7609590 - 7609676
Alignment:
| Q |
6 |
attctttgattgtcttgtctttgaaaaattatgagtagatgttttgtcttggttgggatttagatgagcaatgacaaataattgttt |
92 |
Q |
| |
|
||||||||||||| | |||| |||||| || || |||||||| ||||||||| || |||| || |||||||||||||||||||| |
|
|
| T |
7609590 |
attctttgattgtttattcttcgaaaaaaaataggtggatgttttatcttggttgagaattagttgtgcaatgacaaataattgttt |
7609676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 7439432 - 7439349
Alignment:
| Q |
225 |
ttgtttaactagttcttctttggattcagtaaaattgttggaatagtcatagatgaaatccaaaaataaagctttttcatatga |
308 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| | ||| |||||||| |||||| ||||| |||||||||| ||| |||| |
|
|
| T |
7439432 |
ttgtttaactaattcttctttggatttgataaaatggctggtatagtcatggatgaataccaaagataaagctttgtcacatga |
7439349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University