View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_34 (Length: 352)
Name: NF9119_low_34
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 41733402 - 41733728
Alignment:
| Q |
11 |
gtgttgaagtttttgggaaaaatcggcttagagaaaacaaagggacacaataatgcaaagtgaaaactttaaaactggnnnnnnntcacgaacgttgttt |
110 |
Q |
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| T |
41733402 |
gtgttgaagtttttgggaaaaatcggcttagagaaaacaaagggacacaataatgcaaagtgaaaactttaaaactggaaaaaaatcacgaacgttgttt |
41733501 |
T |
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| Q |
111 |
aaaaacaattagagaataaaattgcaaaaatagactgtgtaccctaaactgcttatcagccccagcccgagtgtacaccggcacccttgaaagtgttttc |
210 |
Q |
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| T |
41733502 |
aaaaacaattagagaataaaattgcaaaaatagactgtgtaccctaaattgcttatcagccccagcccgagtgtacaccggcacccttgaaagtgttttc |
41733601 |
T |
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| Q |
211 |
aattgaaagagttggatgtaaatttaaaatattttcgattgatgagtaacgaataactaaaatcaacattagtctccatctttctttacaatttaaacaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41733602 |
aattgaaagagttggatgtaaatttaaaatattttcgattgatgagtaacgaataactaaaatcaacattagtctccatctttctttacaatttaaacaa |
41733701 |
T |
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| Q |
311 |
attgagattttttcaatacatatattt |
337 |
Q |
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| T |
41733702 |
attgagattttttcaatacatatattt |
41733728 |
T |
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