View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_36 (Length: 347)
Name: NF9119_low_36
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 36693289 - 36692988
Alignment:
| Q |
17 |
gaattaacatggccccactaaaatgacaaaaatattgtctaatttcttgtctgctacagcctacagtaccgtttgttaggcttaggagcatcttaattag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36693289 |
gaattaacatggccccactaaaatgacaaaaatattgtctaatttcttgtctgctacagcctacagtaccgtttgttaggcttaggagcatcttaattag |
36693190 |
T |
|
| Q |
117 |
tctaataaccacatgatattaatctatttgtgatctataacaactgacaagatgctcatgtataatataatataaactaactaatgtaacaacaatgata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36693189 |
tctaataaccacatgatattaatctatttgtgatctataacaactgacaagatgctcatgtataatataatataaactaattaatgtaacaacaatgata |
36693090 |
T |
|
| Q |
217 |
aatatacttattttattttgctacacac-ttcaacaacgtctcattttctctttatctctatccttttatcacattatcaaattatcacgtttattacat |
315 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| || |
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| T |
36693089 |
aatatacatattttattttgctacacacgttcaacaacgtctcattttctctttatctctattcttttatcatattatcaaattatcacgtctattatat |
36692990 |
T |
|
| Q |
316 |
ca |
317 |
Q |
| |
|
|| |
|
|
| T |
36692989 |
ca |
36692988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 36709390 - 36709089
Alignment:
| Q |
17 |
gaattaacatggccccactaaaatgacaaaaatattgtctaatttcttgtctgctacagcctacagtaccgtttgttaggcttaggagcatcttaattag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36709390 |
gaattaacatggccccactaaaatgacaaaaatattgtctaatttcttgtctgctacagcctacagtaccgtttgttaggcttaggagcatcttaattag |
36709291 |
T |
|
| Q |
117 |
tctaataaccacatgatattaatctatttgtgatctataacaactgacaagatgctcatgtataatataatataaactaactaatgtaacaacaatgata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36709290 |
tctaataaccacatgatattaatctatttgtgatctataacaactgacaagatgctcatgtataatataatataaactaattaatgtaacaacaatgata |
36709191 |
T |
|
| Q |
217 |
aatatacttattttattttgctacacac-ttcaacaacgtctcattttctctttatctctatccttttatcacattatcaaattatcacgtttattacat |
315 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| || |
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| T |
36709190 |
aatatacatattttattttgctacacacgttcaacaacgtctcattttctctttatctctattcttttatcatattatcaaattatcacgtctattatat |
36709091 |
T |
|
| Q |
316 |
ca |
317 |
Q |
| |
|
|| |
|
|
| T |
36709090 |
ca |
36709089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 9125008 - 9125070
Alignment:
| Q |
255 |
tctcattttctctttatctctatccttttatcacattatcaaattatcacgtttattacatca |
317 |
Q |
| |
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||||| || ||||| ||||||||| ||||||||||| ||||| |||||| |||||||||||| |
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|
| T |
9125008 |
tctcacttgctcttcatctctatctttttatcacatcatcaatatatcacatttattacatca |
9125070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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