View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_38 (Length: 321)
Name: NF9119_low_38
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 1581249 - 1581550
Alignment:
| Q |
1 |
ctataaacttgtttatttgtttctgcatttaactctacttggtttatgcgattctggaagcttgatgaagaagactttgaaatagtttataaggagatgg |
100 |
Q |
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| T |
1581249 |
ctataaacttgtttatttgtttctgcatttaactgtactttgtttatgcgattctggaagcttgatgaagaagactt-gaaatagtttataaggagatgg |
1581347 |
T |
|
| Q |
101 |
accagtatcagcctcttgaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattggtattcaatttgattatgaac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581348 |
accagtatcagcctctggaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattggtattcaatttgattatgaac |
1581447 |
T |
|
| Q |
201 |
aacttgtaaaagtattttattttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgttttatactgtttacatta |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581448 |
aacttgtaaaagtatt---ttttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgttttatactgtttacatta |
1581544 |
T |
|
| Q |
301 |
ttatct |
306 |
Q |
| |
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|||||| |
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| T |
1581545 |
ttatct |
1581550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 1603566 - 1603265
Alignment:
| Q |
1 |
ctataaacttgtttatttgtttctgcatttaactctacttggtttatgcgattctggaagcttgatgaagaagactttgaaatagtttataaggagatgg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1603566 |
ctataaacttgtttatttgtttctgcatttaactgtactttgtttatgcgattctggaagcttgatgaagaagactt-gaaatagtttataaggagatgg |
1603468 |
T |
|
| Q |
101 |
accagtatcagcctcttgaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattggtattcaatttgattatgaac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603467 |
accagtatcagcctctggaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattggtattcaatttgattatgaac |
1603368 |
T |
|
| Q |
201 |
aacttgtaaaagtattttattttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgttttatactgtttacatta |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603367 |
aacttgtaaaagtatt---ttttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgttttatactgtttacatta |
1603271 |
T |
|
| Q |
301 |
ttatct |
306 |
Q |
| |
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|||||| |
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| T |
1603270 |
ttatct |
1603265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 1613920 - 1613865
Alignment:
| Q |
230 |
cacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgtttta |
286 |
Q |
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|||||||| ||||||||| ||||||||||||||||| | ||||| ||||||||||| |
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| T |
1613920 |
cacgtagt-tttgagttgattcttctagttttaagttgctgcataaaaaatgtttta |
1613865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39615727 - 39615670
Alignment:
| Q |
1 |
ctataaacttgtttatttgtttctgcatttaact-ctacttggtttatgcgattctgg |
57 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||||| |
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| T |
39615727 |
ctataaacttgtttatttctttctgcatttaactagtactttgtttatgcgtttctgg |
39615670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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