View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9119_low_41 (Length: 307)
Name: NF9119_low_41
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 5315313 - 5315597
Alignment:
| Q |
5 |
tgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtca |
104 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5315313 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtca |
5315412 |
T |
|
| Q |
105 |
catttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtacc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315413 |
catttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtacc |
5315512 |
T |
|
| Q |
205 |
agaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5315513 |
agaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcacctt |
5315597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 5284513 - 5284794
Alignment:
| Q |
8 |
tttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacat |
107 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5284513 |
tttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacat |
5284612 |
T |
|
| Q |
108 |
ttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccaga |
207 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5284613 |
ttcgtggccctagcgatactcacttagacagtcttgttggacaagcactatttggagatggagctgctgctcttattgttggctctgacccaataccaga |
5284712 |
T |
|
| Q |
208 |
aatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5284713 |
aattgagagacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcacctt |
5284794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 5302701 - 5302982
Alignment:
| Q |
8 |
tttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacat |
107 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| || || || |||||||||||||||| |
|
|
| T |
5302701 |
tttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtgctcgtgtgttggttgtatgttcagaggtcaccgctgtcacat |
5302800 |
T |
|
| Q |
108 |
ttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccaga |
207 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
5302801 |
ttcgtggccctagtgatactcacttggacagtcttgttggacaagcactatttggagatggagctgctgctcttattgttggctctgaccccgtaccaga |
5302900 |
T |
|
| Q |
208 |
aatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5302901 |
aattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcacctt |
5302982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 5310602 - 5310883
Alignment:
| Q |
8 |
tttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacat |
107 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5310602 |
tttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacat |
5310701 |
T |
|
| Q |
108 |
ttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccaga |
207 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||| |||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5310702 |
ttcgtggccccagtgatactcacttggacagccttgttgggcaagcattgtttggagatggagctgctgctcttattgttggttctgacccagtaccaga |
5310801 |
T |
|
| Q |
208 |
aatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5310802 |
aattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagccattgatggtcacctt |
5310883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 5289614 - 5289333
Alignment:
| Q |
8 |
tttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacat |
107 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5289614 |
tttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtcaccgctgtcacat |
5289515 |
T |
|
| Q |
108 |
ttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccaga |
207 |
Q |
| |
|
| ||||| || |||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5289514 |
tccgtggccccagtgatactcacttggacagccttgttgggcaagcactgtttggagatggagctgctgctcttattgttggttctgacccagtaccaga |
5289415 |
T |
|
| Q |
208 |
aatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
5289414 |
aattgagaaacctatatttgagatggtttggactgcacaaacaattgctccggatagtgaaggagccattgatggccacctt |
5289333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 46706912 - 46706624
Alignment:
| Q |
1 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||| || |
|
|
| T |
46706912 |
aggttgctttgcaggaggcacggggcttcgtttggctaacgatttggctgagaacaacaaaggtgcccgtgtattggttgtttgttctgaagtcactgca |
46706813 |
T |
|
| Q |
101 |
gtcacatttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccag |
200 |
Q |
| |
|
|||||||| || || ||||||||||||||||| |||||||||||||| |||||||| ||||||| |||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
46706812 |
gtcacattccgcggccctagtgatactcacttggacagccttgttgggcaagcactgtttggagtcagagctgctgcacttattgttggttctgatccag |
46706713 |
T |
|
| Q |
201 |
taccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46706712 |
taccagaaattgagaaacctatatttgagatggtttggacttcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
46706624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 44128772 - 44129060
Alignment:
| Q |
1 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
44128772 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgca |
44128871 |
T |
|
| Q |
101 |
gtcacatttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccag |
200 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| || |||||||| || || |||| |
|
|
| T |
44128872 |
gtcacatttcgcggccctagtgatactcacttggacagccttgttggacaggccctatttggagatggagctgctgcactaattgttggttcagatccag |
44128971 |
T |
|
| Q |
201 |
taccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128972 |
taccagaaattgagaaaccaatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
44129060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 44132977 - 44133265
Alignment:
| Q |
1 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
44132977 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgca |
44133076 |
T |
|
| Q |
101 |
gtcacatttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccag |
200 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| || |||||||| || || |||| |
|
|
| T |
44133077 |
gtcacatttcgcggccctagtgatactcacttggacagccttgttggacaggccctatttggagatggagctgctgcactaattgttggttcagatccag |
44133176 |
T |
|
| Q |
201 |
taccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133177 |
taccagaaattgagaaaccaatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
44133265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 44141399 - 44141687
Alignment:
| Q |
1 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
44141399 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactgca |
44141498 |
T |
|
| Q |
101 |
gtcacatttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccag |
200 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| || || |||| |
|
|
| T |
44141499 |
gtcacatttcgcggccctagtgatactcacttggacagccttgttggacaagcactatttggagatggagctgctgcactaattgttggttcagatccag |
44141598 |
T |
|
| Q |
201 |
taccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
44141599 |
taccagaaattgagaaaccaatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggggccattgacggtcacctt |
44141687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 1492366 - 1492650
Alignment:
| Q |
1 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgct |
100 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
1492366 |
aggttgttttgcaggtggcacggtacttcgtttggctaaggatttggctgagaacaacaaaggtgctcgtgtgttagttgtttgttctgaagtcactgca |
1492465 |
T |
|
| Q |
101 |
gtcacatttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccag |
200 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || | |
|
|
| T |
1492466 |
gtcacatttcgtggtcccagtgatacacacttggacagtcttgttggacaagcactatttggagatggagcagctgcacttattgttgggtctgatccgg |
1492565 |
T |
|
| Q |
201 |
taccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtca |
285 |
Q |
| |
|
|||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1492566 |
taccagaaattgaaaaacctatatttgagatgatttggacagcacaaacaattgctcctgatagtgaaggtgccattgatggtca |
1492650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 1478204 - 1478485
Alignment:
| Q |
8 |
tttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacat |
107 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || || || ||||| ||||| |||||||||||||||||||||||||| |||||||| || || || |||| |
|
|
| T |
1478204 |
tttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaataaaggtgctcgtgtgttggttgtttgttctgaagttactgcagtgacat |
1478303 |
T |
|
| Q |
108 |
ttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccaga |
207 |
Q |
| |
|
| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| || ||||| || |||||||| ||||||||| ||||||| |
|
|
| T |
1478304 |
tccgtggtcctagtgatactcatttggacagtcttgttggacaagcactatttggagatggtgctgctgcactcattgttggttctgacccaataccaga |
1478403 |
T |
|
| Q |
208 |
aatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
1478404 |
aattgagaaacctatatttgagatggtttggactgcacaaacaattgctccagacagtgagggagccattgatggtcacctt |
1478485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 5 - 285
Target Start/End: Original strand, 1482395 - 1482675
Alignment:
| Q |
5 |
tgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtca |
104 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| || || || ||||| || || |||||||||||||||||||||||||| |||||||| || || || | |
|
|
| T |
1482395 |
tgctttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaataataaaggtgctcgtgtgttggttgtttgttctgaagttactgcagtga |
1482494 |
T |
|
| Q |
105 |
catttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtacc |
204 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||||||| |||| |
|
|
| T |
1482495 |
cattccgtggtcctagtgatactcatttggacagtcttgttggacaagcactctttggagatggagctgctgcactcattgttggttctgacccaatacc |
1482594 |
T |
|
| Q |
205 |
agaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtca |
285 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| |
|
|
| T |
1482595 |
agaaattgagaaacctatatttgagatggtttggactgcacaaacaattgctccagacagtgagggggccattgacggtca |
1482675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 1505182 - 1505463
Alignment:
| Q |
8 |
tttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacat |
107 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || || || ||||| |||||||||||||| |||||||||||||| || || |||||||| || ||||||| |
|
|
| T |
1505182 |
tttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactgcagtcacat |
1505281 |
T |
|
| Q |
108 |
ttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccaga |
207 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| || || ||| ||||||| |
|
|
| T |
1505282 |
ttcgcggccctagtgatactcacttggacagccttgttggacaagctctatttggagatggagctgctgcactaattgttggttcagatccaataccaga |
1505381 |
T |
|
| Q |
208 |
aatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||| |||||||||||||| ||||||||| |
|
|
| T |
1505382 |
aattgagaaacctatatttgaaatggtttggactgcacaaacaatcgcgcctgatagcgaaggagccattgacggtcacctt |
1505463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 1509329 - 1509610
Alignment:
| Q |
8 |
tttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacat |
107 |
Q |
| |
|
|||||||| ||||| || |||| |||||| || ||||| |||||||| ||| ||| ||||||||||||||||||||| ||| |||||| || ||||||| |
|
|
| T |
1509329 |
tttgcaggtggcactgtgcttcatttggcaaaggatttggctgaaaataaccaagatgctcgtgtgttggttgtttgttctaaagtcattgcagtcacat |
1509428 |
T |
|
| Q |
108 |
ttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccaga |
207 |
Q |
| |
|
|| |||| ||| |||||||||| || ||||| ||||||||||||||| |||||||||||||||| ||||| || |||||||| ||||||| |||||||| |
|
|
| T |
1509429 |
tttgtggccctggtgatactcatttggacagtcttgttggacaagcattatttggagatggagctgctgcactcattgttggtactgaccctgtaccaga |
1509528 |
T |
|
| Q |
208 |
aatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
1509529 |
aattgagaaatctatatttgagatggtttggactgcacaaacaattgctccaaatagtgaaggtgccattgacggtcacctt |
1509610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 273
Target Start/End: Original strand, 1499463 - 1499710
Alignment:
| Q |
26 |
cttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacatttcgtggtcctagtgata |
125 |
Q |
| |
|
||||||||||| || || |||||||| || ||||||||||||||||||||||||||||| |||||| |||| || || ||||| |||| |||||| ||| |
|
|
| T |
1499463 |
cttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaaatcactgcaatctcattttgtggacctagtaata |
1499562 |
T |
|
| Q |
126 |
ctcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccagaaatagagaaacctatatt |
225 |
Q |
| |
|
||||| || ||| ||||||||||||||| |||||||||||||||| || || | |||||||||||||||| |||||| ||||| ||||||||| |||| |
|
|
| T |
1499563 |
ctcacctacacaaacttgttggacaagcaatatttggagatggagctgcggcagtcattgttggctctgacctagtacctgaaattgagaaacctttatt |
1499662 |
T |
|
| Q |
226 |
tgagatggtttggactgcacaaacaattgctccagatagtgaaggagc |
273 |
Q |
| |
|
|||| | |||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
1499663 |
tgagttagtttggactgcacaaacaattgcttctgatagtgaaggagc |
1499710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 1487006 - 1487136
Alignment:
| Q |
139 |
ccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccagaaatagagaaacctatatttgagatggtttgg |
238 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| | || | ||||||||||| || || || || |||| ||||||||| | |||||| | |||||| |
|
|
| T |
1487006 |
ccttgttggacaagcattatttggtgatggagctgttgtagtcattgttggctccgatccgatatcaaaaattgagaaacctctctttgagcttgtttgg |
1487105 |
T |
|
| Q |
239 |
actgcacaaacaattgctccagatagtgaag |
269 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |
|
|
| T |
1487106 |
actgcacaaacaatagctctagatagtgaag |
1487136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 24163707 - 24163442
Alignment:
| Q |
8 |
tttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgctgtcacat |
107 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| || || || ||||| |||||||||||| ||||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
24163707 |
tttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggttctcgtgtgttggttgtttgttctgaagttaccgcaatcacat |
24163608 |
T |
|
| Q |
108 |
ttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccagtaccaga |
207 |
Q |
| |
|
|| |||| || || |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||| ||| || |
|
|
| T |
24163607 |
tttgtggaccaagcgatactcacttagacaaccttgttggacaagctctatttggagatggagctgctgcagtcattgttggctctgacccaatacagga |
24163508 |
T |
|
| Q |
208 |
aatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagc |
273 |
Q |
| |
|
||| ||||||||| |||||||| | |||||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
24163507 |
aattgagaaacctctatttgagttagtttggacagcacaaacaatcgctccaaatagtgaaggagc |
24163442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 37863314 - 37863026
Alignment:
| Q |
1 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgct |
100 |
Q |
| |
|
|||||| ||||| || || ||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| || || |||| || |
|
|
| T |
37863314 |
aggttgttttgctggtgggacggtgcttcgtttggctaaagatttggctgaaaacaacaaaggcgctcgtgttttggtggtttgttcggagatcactgca |
37863215 |
T |
|
| Q |
101 |
gtcacatttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccag |
200 |
Q |
| |
|
|| || || ||||| |||||||||||||| | || || ||||| || || ||| | ||||||||||| || || ||| | |||||||| || || || |
|
|
| T |
37863214 |
gttactttccgtggacctagtgatactcatcttgatagtcttgtggggcaggcattgtttggagatggtgcagcagctgtgattgttggttcagatccgt |
37863115 |
T |
|
| Q |
201 |
taccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
| |||||| | ||||| ||| | ||||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
37863114 |
tgccagaagttgagaagcctttgtttgaattggtttggactgcacaaacaatcgttccagatagtgaaggagctattgatggtcacctt |
37863026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 37859288 - 37859000
Alignment:
| Q |
1 |
aggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtttgctctgaagtcaccgct |
100 |
Q |
| |
|
|||||| ||||| || |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| || || | || || |
|
|
| T |
37859288 |
aggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaacaacaaaggtgctcgtgtgttggtagtttgttcagagataactgca |
37859189 |
T |
|
| Q |
101 |
gtcacatttcgtggtcctagtgatactcacttagacagccttgttggacaagcactatttggagatggagcggctgctcttattgttggctctgacccag |
200 |
Q |
| |
|
|| || || ||||| || ||||| ||||| | || |||||||| || |||||| | ||||||||||| || || ||| | || || || || |||||| |
|
|
| T |
37859188 |
gttactttccgtggacccagtgacactcatcttgatagccttgtggggcaagcattgtttggagatggtgcagcagctgtgatcgtaggttcagacccat |
37859089 |
T |
|
| Q |
201 |
taccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||||| || | |||||||| | ||||| |||| |||||||||||||| || |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
37859088 |
taccacaagttgagaaacccttgtttgaattggtatggactgcacaaacgatccttccagatagtgaaggagcaattgacggtcacctt |
37859000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 39030294 - 39030344
Alignment:
| Q |
26 |
cttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttg |
76 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
39030294 |
cttcgcttggctaaagatttggctgagaacaacaaaggtgcccgtgtgttg |
39030344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 39030426 - 39030541
Alignment:
| Q |
158 |
tttggagatggagcggctgctcttattgttggctctgacccagtaccagaaatagagaaacctatatttgagatggtttggactgcacaaacaattgctc |
257 |
Q |
| |
|
||||||||||| ||||| ||| | |||||||| || ||||| | |||||| | ||||| ||| | ||||| |||| |||||||||||||| || || |
|
|
| T |
39030426 |
tttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattc |
39030525 |
T |
|
| Q |
258 |
cagatagtgaaggagc |
273 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39030526 |
cagatagtgaaggagc |
39030541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 35251034 - 35251080
Alignment:
| Q |
26 |
cttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgt |
72 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
35251034 |
cttcgtttggctaaagatttggctgagaacaataaaggtgctcgtgt |
35251080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 35251251 - 35251304
Alignment:
| Q |
236 |
tggactgcacaaacaattgctccagatagtgaaggagccattgatggtcacctt |
289 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |
|
|
| T |
35251251 |
tggactgcacaaacaatccttcctgatagtcaaggagctattgatggtcacctt |
35251304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University