View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_42 (Length: 303)
Name: NF9119_low_42
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 40187528 - 40187260
Alignment:
| Q |
15 |
tggtggtcatatatgcacggagtggtgaccatcggtcgtcgaagtggtagtgatgattagattggtgatcaaagatgaatagagtggccatctttgatgg |
114 |
Q |
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| T |
40187528 |
tggtggtcatatatgcatggagtggtgaccatcggtcgtcgaagtggtagtgatgattagattggtgatcaaagatgaatagagtggcaatctttgatgg |
40187429 |
T |
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| Q |
115 |
gacgatgaccataagatggatgacaatggtcagggtgattcccgatggtggtcaaactagtagtcaatggtgagcaggagtagttgacgatggtcaaagt |
214 |
Q |
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| T |
40187428 |
gac-atggt-ataagatggataacaatggtcacggtgattaccgatgatggtcaaactagtagtcaatggtgagcaggagtagttgacgatggtcaaagt |
40187331 |
T |
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| Q |
215 |
aacgatgatcaaatgttggtcgatgacggtgacttgttaacgataaaacaaacaaaaccattttatccaaa |
285 |
Q |
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|||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||| |
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| T |
40187330 |
aacgatgatcaaatgttggtcgatgacgatgacatgttaaagataaaacaaacaaacccattttatccaaa |
40187260 |
T |
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