View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9119_low_47 (Length: 271)
Name: NF9119_low_47
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_47 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 48766554 - 48766287
Alignment:
| Q |
4 |
ttgttgttgtggggttctctggttcactaaatgtctaaatgaaccattccctctatggttgatatcattcaagagaagcaagtcaattccaaaatcactt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48766554 |
ttgttgttgtggggttctctggttcactaaatgtctaaatgaaccattccctctatggttgatatcattcaagagaagcaagtcaattccaaaatcactt |
48766455 |
T |
|
| Q |
104 |
atgatgggttccatttctgaatttaataagacgttgcttggtttaacattgccatgcacgtgtttcttctcgtgaagataagctagtcctcttgcaactc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48766454 |
atgatgggttccatttctgaatttaataagacgttgcttggtttaacattgccatgcacgtgtttcttctcgtgaagataagctagtcctcttgcaactc |
48766355 |
T |
|
| Q |
204 |
cttttactatcttcaaacgcacctccaaggataagttcataggggacgaccctcctcttcctaaacat |
271 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48766354 |
cttttgctatcttcaaacgcacctccaaggataagttcataggggacgaccctcctcttcctaaacat |
48766287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University