View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9119_low_5 (Length: 623)

Name: NF9119_low_5
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9119_low_5
NF9119_low_5
[»] scaffold1643 (1 HSPs)
scaffold1643 (389-601)||(112-321)
[»] chr3 (39 HSPs)
chr3 (389-607)||(6945210-6945425)
chr3 (389-601)||(6733616-6733825)
chr3 (389-607)||(6941878-6942093)
chr3 (195-358)||(6523993-6524156)
chr3 (195-341)||(6841958-6842111)
chr3 (389-601)||(6781838-6782047)
chr3 (1-138)||(6842188-6842335)
chr3 (389-601)||(6556596-6556805)
chr3 (1-138)||(6524233-6524361)
chr3 (389-601)||(6523364-6523573)
chr3 (389-566)||(7585813-7585987)
chr3 (389-601)||(6841449-6841658)
chr3 (233-392)||(6944795-6944950)
chr3 (433-602)||(6450672-6450838)
chr3 (442-574)||(6530427-6530556)
chr3 (433-554)||(6730648-6730766)
chr3 (430-598)||(8570833-8570998)
chr3 (389-601)||(8587865-8588074)
chr3 (392-488)||(6481974-6482070)
chr3 (389-500)||(6782308-6782419)
chr3 (389-486)||(4390906-4391003)
chr3 (388-480)||(5296683-5296775)
chr3 (389-528)||(8469502-8469641)
chr3 (389-466)||(6593366-6593443)
chr3 (389-466)||(6880455-6880532)
chr3 (389-466)||(6898027-6898104)
chr3 (407-466)||(6724092-6724151)
chr3 (389-466)||(7747941-7748018)
chr3 (430-486)||(5266062-5266118)
chr3 (399-463)||(6243266-6243330)
chr3 (399-463)||(6263631-6263695)
chr3 (389-468)||(5261877-5261956)
chr3 (399-466)||(6235996-6236063)
chr3 (431-465)||(6915082-6915116)
chr3 (399-463)||(6140235-6140299)
chr3 (399-463)||(6166846-6166910)
chr3 (399-463)||(6257151-6257215)
chr3 (399-463)||(13275420-13275484)
chr3 (431-486)||(5248158-5248213)
[»] scaffold0425 (4 HSPs)
scaffold0425 (195-392)||(10113-10317)
scaffold0425 (4-138)||(10394-10528)
scaffold0425 (389-601)||(9644-9853)
scaffold0425 (407-465)||(13548-13606)
[»] scaffold2053 (1 HSPs)
scaffold2053 (434-607)||(131-301)
[»] scaffold0958 (1 HSPs)
scaffold0958 (430-525)||(1746-1841)


Alignment Details
Target: scaffold1643 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 389 - 601
Target Start/End: Original strand, 112 - 321
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  112 gactccacgttttcaaactcatcactaacttcaaattgatacagagaattgagttggaacaaactccactcctctctcgaaccaatcagtcttgggcaat 211  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |  |||||||||| |  |||| ||||||||| |||||||   ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||    
T  212 tgtatattccaaggtccctcaagttggaaggcaaaccac---ccattggaaacgattccagctctggacaatcgtccagatacagataatgaagtttggt 308  T
Q  589 caacaagtgtagt 601  Q
     ||||||||||||    
T  309 gaacaagtgtagt 321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 389 - 607
Target Start/End: Original strand, 6945210 - 6945425
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||||||||||||||||||||||||||  |||| |   |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  6945210 gactccacgttttcaaactcatcactaacaacgaattcaatgagagaattgagttggaacaaaccccactcctctcttgaaccaatcagttttgggcaat 6945309  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |  ||||| ||||||  |||| ||||||||| |||||||   |||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||    
T  6945310 tgtatattacaagttccctcaagttggaaggcaaaccac---ccattggaaaggattccagctctggacaatcgtacagatacagataatgaagtttggt 6945406  T
Q  589 caacaagtgtagtgaaaaa 607  Q
     ||||||||||||||||||    
T  6945407 gaacaagtgtagtgaaaaa 6945425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 389 - 601
Target Start/End: Original strand, 6733616 - 6733825
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||||||||||||||||||||| ||||  |||  |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6733616 gactccacgttttcaaactcatcactgacaaagaatgaatacaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6733715  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |   |||||||||  |||||| ||||||||| |||||||   |||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  6733716 tgtgtattccaaggaggctcaagttggaaggcaaaccac---ccattggaaacgattccagctctggacaatcaaacaaacacagataatgaagtttggt 6733812  T
Q  589 caacaagtgtagt 601  Q
     ||||||||||||    
T  6733813 gaacaagtgtagt 6733825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 389 - 607
Target Start/End: Original strand, 6941878 - 6942093
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||| |||||||||||||||||||||   ||||   |||  ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6941878 gactccacattttcaaactcatcactaacagagaattctaacaaggaactgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6941977  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |  |||||  ||| |  |||| ||||||||| |||||||||   |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  6941978 tgtatattttaaggttcctcaagttggaaggcaaaccaccc---attggaaacgattccagctctggacaatcgtacagatacagataatgaagtttggt 6942074  T
Q  589 caacaagtgtagtgaaaaa 607  Q
     ||||||||||||||||||    
T  6942075 gaacaagtgtagtgaaaaa 6942093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 195 - 358
Target Start/End: Complemental strand, 6524156 - 6523993
Alignment:
Q  195 tttgactaagagatatattcggaccttccaaacagcgtaataacccttgtgtgtgggaaatttgttcaccttaattcagatattcacaaagagtcaaagt 294  Q
    |||||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6524156 tttgactaagagatatattcggacctta-attcagcgtaataacccttgtgtgtgggaaatttgttcacctgaattcagatattcacaaagagtcaaagt 6524058  T
Q  295 atgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaattaactttcattgctgcc 358  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| |||||| |||||    
T  6524057 atgtgggacccataacttggtcttgctagcactatgtggcggtgc-aattaaccttcattcctgcc 6523993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 195 - 341
Target Start/End: Complemental strand, 6842111 - 6841958
Alignment:
Q  195 tttgactaagagatatat--tcggaccttccaaacagcgtaataacccttgtgtgtgggaaatttgttcaccttaattca---gatattcacaaagagtc 289  Q
    |||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  6842111 tttgacaaagagatatatgttcggaccttccaaacagtgtaataacccttgtgtgtgggaaatttgttcaccttaattcagatgatattcacaaagagtc 6842012  T
Q  290 aaagtatgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaat 341  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  6842011 aaagtatgtgggacccataacttggtcttgctagcactatgtggcggtgcaaat 6841958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 389 - 601
Target Start/End: Complemental strand, 6782047 - 6781838
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||| |||||||||||||||||||||   ||||   |||  ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6782047 gactccacattttcaaactcatcactaacagagaattctaacaaggaactgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6781948  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |  |||||  |||    |||| ||||||||| |||||||||   |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  6781947 tgtatattttaaggctcctcaagttggaaggcaaaccaccc---attggaaacgattccagctctggacaatcgtacagatacagataatgaagtttggt 6781851  T
Q  589 caacaagtgtagt 601  Q
     ||||||||||||    
T  6781850 gaacaagtgtagt 6781838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 6842335 - 6842188
Alignment:
Q  1 tcaccacagtccaattgagtttgttctctaacactcttaacacaatca---------tcatttccgaaactaccctcactcatattgtcccaaatcatac 91  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  6842335 tcaccacactccaattgagtttgttctctaacactcttaacacaatcaccacaatcatcatttccgaaactaccctcactcatattgtcccaaatcatac 6842236  T
Q  92 aaaaac-aaattcccaccactcttcaaactattccaaatgaagaatcc 138  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||    
T  6842235 aaaaacaaaagtcccaccactcttcaaactattccaaatgaagaatcc 6842188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 389 - 601
Target Start/End: Complemental strand, 6556805 - 6556596
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    ||||||||||||||||||||||||  |||| | ||    | ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6556805 gactccacgttttcaaactcatcagcaacagtgaaacatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6556706  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |  |||||||||||||  ||| ||||||||| |||||||   |||||||||  ||||||||||||||||||||||||| || |||| | |||||||||||    
T  6556705 tgtatattccaagttgtatcaagttggaaggcaaaccac---ccattggaagggattccagctctggacaatcgtacagatacagagattgaagtttggt 6556609  T
Q  589 caacaagtgtagt 601  Q
     ||||||||||||    
T  6556608 gaacaagtgtagt 6556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 6524361 - 6524233
Alignment:
Q  1 tcaccacagtccaattgagtttgttctctaacactcttaacacaatcatcatttccgaaactaccctcactcatattgtcccaaatcatacaaaaacaaa 100  Q
    |||||||| |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524361 tcaccacactccaattgagtttgttctctaacac---------aatcatcatttccgaaactaccctcactcatattgtcccaaatcatacaaaaacaaa 6524271  T
Q  101 ttcccaccactcttcaaactattccaaatgaagaatcc 138  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6524270 ttcccaccactcttcaaactattctaaatgaagaatcc 6524233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 389 - 601
Target Start/End: Complemental strand, 6523573 - 6523364
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||||||||||||||||||||||||||  || |    ||  ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  6523573 gactccacgttttcaaactcatcactaacaaagaaatatctcaaggaattgagttggaacaacccccactcctctctcgaaccaatcagtcttgggcaat 6523474  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |  |||||||||| |  |||| ||||||||| |||||||   |||||||||||||||||||||||||||||||||||| | ||||| || ||||  ||||    
T  6523473 tgtatattccaaggtccctcaagttggaaggcaaaccac---ccattggaaacgattccagctctggacaatcgtacagacgcagagaacgaagactggt 6523377  T
Q  589 caacaagtgtagt 601  Q
     ||||||||||||    
T  6523376 gaacaagtgtagt 6523364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 389 - 566
Target Start/End: Original strand, 7585813 - 7585987
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    ||||||||||||||||||||||||||||||   ||      ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  7585813 gactccacgttttcaaactcatcactaacaccgaaagctctcagagaattgagttggaacaaaccccactgctctctcaaagcaatcagttttgggcaat 7585912  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtaca 566  Q
    |  ||||||||||   || || ||||||||| |||||||   ||||||||||||||||||||||||||||||||||||    
T  7585913 tgtatattccaagactgcacaagttggaaggcaaaccac---ccattggaaacgattccagctctggacaatcgtaca 7585987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 389 - 601
Target Start/End: Complemental strand, 6841658 - 6841449
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||||||||||||||||||||||||| | ||    | ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6841658 gactccacgttttcaaactcatcactaacactgaaccatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6841559  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |   |||||  || |  |||| ||||||||| |||||||   ||||||||||||||||||||||||||||||||| || || |||| || ||||  ||||    
T  6841558 tatgtattctgaggtccctcaagttggaaggcaaaccac---ccattggaaacgattccagctctggacaatcgtccagatacagagaacgaagactggt 6841462  T
Q  589 caacaagtgtagt 601  Q
     ||||||||||||    
T  6841461 gaacaagtgtagt 6841449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 233 - 392
Target Start/End: Original strand, 6944795 - 6944950
Alignment:
Q  233 aataacccttgtgtgtgggaaatttgttcaccttaattcagatattcacaaagagtcaaagtatgtgggacccataacttggtcttgctagcac--tgtg 330  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||||||| ||||||||||||  ||||    
T  6944795 aataacccttgtgtgtgggaaatttgttcaccttaattca-atattc----agagtcaaagtatgtgggacccataacttgttcttgctagcactatgtg 6944889  T
Q  331 gcgatgcaaattaactttcattgctgccaaatgtggtcaatctccacattcgggatgtgact 392  Q
    ||| ||| ||||||| |||||| || | |||||| |||||||  ||||||||||||||||||    
T  6944890 gcggtgc-aattaaccttcattccttctaaatgtcgtcaatccacacattcgggatgtgact 6944950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 433 - 602
Target Start/End: Complemental strand, 6450838 - 6450672
Alignment:
Q  433 agaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaagttggctcatgttggaaggaaaaccacccgcc 532  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||| |  |||| || |||||| |||||||   ||    
T  6450838 agaattgagttggaacaaaccccactcctctctcgaagcaatcagttttgggcaattccatattacaaggttcctcaagtgggaaggcaaaccac---cc 6450742  T
Q  533 attggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtg 602  Q
     ||||||||||||| |||||||  |||||  |||||| || | | ||||| || || |||||||||||||    
T  6450741 cttggaaacgattctagctctgtgcaatcagacaaatacaaagagtgaagatttgtgaacaagtgtagtg 6450672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 442 - 574
Target Start/End: Complemental strand, 6530556 - 6530427
Alignment:
Q  442 ttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaac 541  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||  |||||  ||| |  |||| ||||| ||| |||||||   ||||||||||     
T  6530556 ttggaacagaccccactcctctctcgaaccaatcagttttgggcaattacatattgaaaggtcactcaagttgggaggcaaaccac---ccattggaaag 6530460  T
Q  542 gattccagctctggacaatcgtacaaatgcaga 574  Q
    |||||||||||||||||||||||||||| ||||    
T  6530459 gattccagctctggacaatcgtacaaatacaga 6530427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 433 - 554
Target Start/End: Complemental strand, 6730766 - 6730648
Alignment:
Q  433 agaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaagttggctcatgttggaaggaaaaccacccgcc 532  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||| |  |||| || |||||| |||||||   ||    
T  6730766 agaattgagttggaacaaaccccactcctctctcgaagcaatcagttttgggcaattccatattacaaggttcctcaagtgggaaggcaaaccac---cc 6730670  T
Q  533 attggaaacgattccagctctg 554  Q
     ||||||||||||| |||||||    
T  6730669 cttggaaacgattctagctctg 6730648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 430 - 598
Target Start/End: Complemental strand, 8570998 - 8570833
Alignment:
Q  430 cagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaagttggctcatgttggaaggaaaaccaccc 529  Q
    |||||| || ||||||||||||||||| ||||||||  ||||||| | ||||||||||||   |||| |||||| ||||| ||||||||| ||||| |      
T  8570998 cagagagttaagttggaacaaaccccaatcctctcttgaaccaattaattttgggcaattttgtattacaagtttgctcaagttggaaggcaaacctc-- 8570901  T
Q  530 gccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgt 598  Q
     || ||||||| |||||||||| |||||||||| |||| |  ||||||||||| ||||| |||||||||    
T  8570900 -cccttggaaatgattccagctgtggacaatcggacaactctagataatgaagattggtgaacaagtgt 8570833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 389 - 601
Target Start/End: Original strand, 8587865 - 8588074
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||||||||||||||||||||||||  | ||    |  |||||||||||||||||||||||||| | ||||||| || |||||||||| || ||||    
T  8587865 gactccacgttttcaaactcatcactaactttgaaagattttagagaattgagttggaacaaaccccattgctctctcgaagcaatcagtttaggacaat 8587964  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
      |||||| |||| | | ||| ||  ||||||||||| |   || | ||||||||||||| |||||||||| || ||||| | ||||||| ||| |||||    
T  8587965 cgaatattacaaggtcggtcaagtgtgaaggaaaacctc---ccctaggaaacgattccaactctggacaaccgcacaaacgaagataatcaagattggt 8588061  T
Q  589 caacaagtgtagt 601  Q
     ||||||||||||    
T  8588062 gaacaagtgtagt 8588074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 6482070 - 6481974
Alignment:
Q  392 tccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    ||||||||||||||||||||||||||  |||| |  | |||||||||||||||||||||||||||||| |||||  || ||||||||||||||||||    
T  6482070 tccacgttttcaaactcatcactaactctaaactctttcagagaattgagttggaacaaaccccactcttctcttgaagcaatcagttttgggcaat 6481974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 389 - 500
Target Start/End: Complemental strand, 6782419 - 6782308
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||||||||||||||||||| ||||||  ||    | ||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  6782419 gactccacgttttcaaactcatcagtaacaaagaaagatttcaaggaattgagttggaacaaaccccactcctctcttgaaccaatcagttttgggcaat 6782320  T
Q  489 tcaatattccaa 500  Q
    |  |||||||||    
T  6782319 tatatattccaa 6782308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 389 - 486
Target Start/End: Complemental strand, 4391003 - 4390906
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggca 486  Q
    |||||||| |||||||| ||||||| |||||| || |  |  |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  4391003 gactccacattttcaaagtcatcaccaacaatgaaatcttttagagaattgagttggaacaaaccccactcccctctcaaagcaattagttttgggca 4390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 480
Target Start/End: Original strand, 5296683 - 5296775
Alignment:
Q  388 tgactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttt 480  Q
    |||||||| ||||||||| ||||| |||||||| ||||  | ||||||||||||||||||||| ||||||| ||||||| || | ||||||||    
T  5296683 tgactccatgttttcaaagtcatcgctaacaatgaattctttcagagaattgagttggaacaacccccacttctctctcgaagctatcagttt 5296775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 389 - 528
Target Start/End: Original strand, 8469502 - 8469641
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    ||||| ||||||||||||||||| |||||||  |||   | ||  |||||||||  ||||||||||||||||| ||||||| |||||| || ||||||||    
T  8469502 gactctacgttttcaaactcatcgctaacaaagaatgatttcaaggaattgagtctgaacaaaccccactcctgtctcaaagcaatcaattctgggcaat 8469601  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacc 528  Q
    || ||||| ||||    |||| ||||||||| ||||||||    
T  8469602 tccatattacaaggcctctcaagttggaaggcaaaccacc 8469641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 6593443 - 6593366
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 466  Q
    ||||||| | ||| ||| |||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||||||    
T  6593443 gactccaagatttgaaaatcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctc 6593366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 6880455 - 6880532
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 466  Q
    ||||||| | |||| || ||||||| |||| | ||||| | |||||||||||||||||||||||||||||||||||||    
T  6880455 gactccaagatttccaaatcatcaccaacactgaattgtttcagagaattgagttggaacaaaccccactcctctctc 6880532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 6898027 - 6898104
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 466  Q
    ||||||| | ||||||| |||||||| ||| | || || | |||||||||||||||||||||||||||||||||||||    
T  6898027 gactccaagatttcaaaatcatcacttacactgaactgtttcagagaattgagttggaacaaaccccactcctctctc 6898104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 6724151 - 6724092
Alignment:
Q  407 tcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 466  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||||||    
T  6724151 tcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctc 6724092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 7747941 - 7748018
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 466  Q
    ||||||| | ||||||| ||||||||||||   ||||| |  ||||| ||||||||||||||||||||||||||||||    
T  7747941 gactccaagatttcaaaatcatcactaacacataattgttttagagatttgagttggaacaaaccccactcctctctc 7748018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 5266062 - 5266118
Alignment:
Q  430 cagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggca 486  Q
    ||||||||| ||||||||||||||||||||| ||||| || |||| |||||||||||    
T  5266062 cagagaatttagttggaacaaaccccactcccctctcgaagcaattagttttgggca 5266118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 6243266 - 6243330
Alignment:
Q  399 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 463  Q
    ||||||| |||||||||| | | ||||| | |||||| |||||||||||||||||||||||||||    
T  6243266 tttcaaaatcatcactaagactgaattgtttcagagatttgagttggaacaaaccccactcctct 6243330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 6263631 - 6263695
Alignment:
Q  399 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 463  Q
    ||||||| |||||||||| | | ||||| | |||||| |||||||||||||||||||||||||||    
T  6263631 tttcaaaatcatcactaagactgaattgtttcagagatttgagttggaacaaaccccactcctct 6263695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 468
Target Start/End: Original strand, 5261877 - 5261956
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaa 468  Q
    |||||||| || ||||| || ||||||||  | ||||  | |||||||||||||| ||||||||||||||||||||||||    
T  5261877 gactccacattctcaaagtcgtcactaactttgaattctttcagagaattgagttcgaacaaaccccactcctctctcaa 5261956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 6235996 - 6236063
Alignment:
Q  399 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctc 466  Q
    ||||||| |||||||||||| | ||||| |  | ||| ||||||||||||||||||||||||||||||    
T  6235996 tttcaaaatcatcactaacactcaattgttttaaagatttgagttggaacaaaccccactcctctctc 6236063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 465
Target Start/End: Original strand, 6915082 - 6915116
Alignment:
Q  431 agagaattgagttggaacaaaccccactcctctct 465  Q
    |||||||||||||||||||||||||||||||||||    
T  6915082 agagaattgagttggaacaaaccccactcctctct 6915116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 6140235 - 6140299
Alignment:
Q  399 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 463  Q
    ||||||| |||||||||| | | ||||| | |||||| ||||||| |||||||||||||||||||    
T  6140235 tttcaaaatcatcactaagactgaattgtttcagagatttgagtttgaacaaaccccactcctct 6140299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 6166846 - 6166910
Alignment:
Q  399 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 463  Q
    ||||||| |||||||||| | | ||||| | |||||| ||||||| |||||||||||||||||||    
T  6166846 tttcaaaatcatcactaagacttaattgtttcagagatttgagtttgaacaaaccccactcctct 6166910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 6257151 - 6257215
Alignment:
Q  399 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 463  Q
    ||||||| || ||||||| | | ||||| | |||||| |||||||||||||||||||||||||||    
T  6257151 tttcaaaatcgtcactaagagtgaattgtttcagagatttgagttggaacaaaccccactcctct 6257215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 13275484 - 13275420
Alignment:
Q  399 tttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctct 463  Q
    ||||||| |||||||||| | | ||||| | |||||| ||||||| |||||||||||||||||||    
T  13275484 tttcaaaatcatcactaagactgaattgtttcagagatttgagtttgaacaaaccccactcctct 13275420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 486
Target Start/End: Original strand, 5248158 - 5248213
Alignment:
Q  431 agagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggca 486  Q
    |||||||| |||||||| |||||||||||| ||||| || |||| |||||||||||    
T  5248158 agagaattaagttggaataaaccccactcccctctcgaagcaattagttttgggca 5248213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 195 - 392
Target Start/End: Complemental strand, 10317 - 10113
Alignment:
Q  195 tttgactaagagatatattcggaccttccaaacagcgtaat------aacccttgtgtgtgggaaatttgttcaccttaattcagatattcacaaagagt 288  Q
    |||||| ||||||||| |||||||||||||||||| |||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317 tttgacaaagagatatgttcggaccttccaaacagtgtaattgtaataacccttgtgtgtgggaaatttgttcaccttaattcagatattcacaaagagt 10218  T
Q  289 caaagtatgtgggacccataacttggtcttgctagcac--tgtggcgatgcaaattaactttcattgctgccaaatgtggtcaatctccacattcgggat 386  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| |||||| ||||  ||||| ||||||   ||||||||||||    
T  10217 caaagtatgtgggacccataacttggtcttgctagcactatgtggcggtgc-aattaaccttcattcctgcttaatgttgtcaatgcacacattcgggat 10119  T
Q  387 gtgact 392  Q
    ||||||    
T  10118 gtgact 10113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 10528 - 10394
Alignment:
Q  4 ccacagtccaattgagtttgttctctaacactcttaacacaatcatcatttccgaaactaccctcactcatattgtcccaaatcatacaaaaacaaattc 103  Q
    ||||| |||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10528 ccacactccaattgagtttgttctctaacacaatcaccacaatcatcatttccgaaactaccctcactcatattgtcccaaatcatacaaaaacaaattc 10429  T
Q  104 ccaccactcttcaaactattccaaatgaagaatcc 138  Q
    |||||||||||||||||||||||||||||||||||    
T  10428 ccaccactcttcaaactattccaaatgaagaatcc 10394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 389 - 601
Target Start/End: Complemental strand, 9853 - 9644
Alignment:
Q  389 gactccacgttttcaaactcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaat 488  Q
    |||||||||||||||||||||||  ||||||  ||    | ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9853 gactccacgttttcaaactcatccgtaacaaagaaagatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 9754  T
Q  489 tcaatattccaagttggctcatgttggaaggaaaaccacccgccattggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggt 588  Q
    |  |||||  |||    | || ||||||||| |||||||||   |||||||||||||||||||||||||||||||||| || |||||||| ||| |||||    
T  9753 tgtatatttgaagactccccaagttggaaggcaaaccaccc---attggaaacgattccagctctggacaatcgtacagatacagataattaagattggt 9657  T
Q  589 caacaagtgtagt 601  Q
     ||||||||||||    
T  9656 gaacaagtgtagt 9644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 13606 - 13548
Alignment:
Q  407 tcatcactaacaataaattgatacagagaattgagttggaacaaaccccactcctctct 465  Q
    |||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||    
T  13606 tcatcactaacactgaattgtttcagagaattgagttggaacaaaccccactcctctct 13548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 434 - 607
Target Start/End: Complemental strand, 301 - 131
Alignment:
Q  434 gaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaagttggctcatgttggaaggaaaaccacccgcca 533  Q
    |||||||||||||||||||||||||||| |||  || ||||||||||||||||||||  |||   ||| | |  || ||||||||| || ||||||   |    
T  301 gaattgagttggaacaaaccccactcctttcttgaagcaatcagttttgggcaattctctatataaaggtcggccaagttggaaggcaatccaccc---a 205  T
Q  534 ttggaaacgattccagctctggacaatcgtacaaatgcagataatgaagtttggtcaacaagtgtagtgaaaaa 607  Q
    || ||||| |||||||||||||||||||||| | || |||| ||||||||||||| ||||||||||||||||||    
T  204 tttgaaaccattccagctctggacaatcgtatagatacagagaatgaagtttggtgaacaagtgtagtgaaaaa 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 525
Target Start/End: Complemental strand, 1841 - 1746
Alignment:
Q  430 cagagaattgagttggaacaaaccccactcctctctcaaaccaatcagttttgggcaattcaatattccaagttggctcatgttggaaggaaaacc 525  Q
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T  1841 cagagagttgagttggaacaaacccctttcctgtctccaaccaattagttttgggcaattgtctattataagtttgctcaagttggaaggcaaacc 1746  T

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