View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_50 (Length: 248)
Name: NF9119_low_50
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_50 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1581165 - 1580918
Alignment:
| Q |
1 |
aaactattttgcctcataacatgtttccaatcttgtacaagactgtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggt |
100 |
Q |
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| T |
1581165 |
aaactattttgcctcataacatgtttccaatcttgtacaagactgtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggt |
1581066 |
T |
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| Q |
101 |
ccaacacaatcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctat |
200 |
Q |
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| T |
1581065 |
ccaacacaatcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctat |
1580966 |
T |
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| Q |
201 |
atcttctttaagtgacattaaaagacgactttggtgtttactgagatc |
248 |
Q |
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| T |
1580965 |
atcttctttaagtgacattaaaagacgactttggtgtttactgagatc |
1580918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 1603650 - 1603897
Alignment:
| Q |
1 |
aaactattttgcctcataacatgtttccaatcttgtacaagactgtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggt |
100 |
Q |
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| T |
1603650 |
aaactattttgcctcataacatgtttccaatcttgtacaagactgtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggt |
1603749 |
T |
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| Q |
101 |
ccaacacaatcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctat |
200 |
Q |
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| T |
1603750 |
ccaacacaatcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctat |
1603849 |
T |
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| Q |
201 |
atcttctttaagtgacattaaaagacgactttggtgtttactgagatc |
248 |
Q |
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| T |
1603850 |
atcttctttaagtgacattaaaagacgactttggtgtttactgagatc |
1603897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 1587579 - 1587507
Alignment:
| Q |
60 |
ccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagttta |
132 |
Q |
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| T |
1587579 |
ccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacagtcacttctaaaccatcctgttta |
1587507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 1590654 - 1590716
Alignment:
| Q |
70 |
aaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagttta |
132 |
Q |
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| T |
1590654 |
aaagacattctgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggttta |
1590716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 19270206 - 19270271
Alignment:
| Q |
60 |
ccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaac |
125 |
Q |
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| T |
19270206 |
ccacttcctcaacgacattgtgaactctctaaaagaagggtccaacacaatcacttctaaaccaac |
19270271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 39615893 - 39615951
Alignment:
| Q |
74 |
acattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagttta |
132 |
Q |
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| T |
39615893 |
acattgtgaagcttctaaaataagggtccaacacaatcacttctaaaccaaccggttta |
39615951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 39616012 - 39616044
Alignment:
| Q |
202 |
tcttctttaagtgacattaaaagacgactttgg |
234 |
Q |
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| T |
39616012 |
tcttctttaagtggcattaaaagacgactttgg |
39616044 |
T |
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