View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9119_low_55 (Length: 240)
Name: NF9119_low_55
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 45596141 - 45596237
Alignment:
| Q |
130 |
ccaacaagagtttgtatctactgatataccttccccatctgttcaatgtgaggagaaaaacgaagagcttcataacaagcacggcagcgaagctttt |
226 |
Q |
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| T |
45596141 |
ccaacaagagtttgtatctactgatataccttccccatctgttcaatgcgaggagaaaaacgaagagcttcataacaagcacggcagcgaagctttt |
45596237 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45596012 - 45596074
Alignment:
| Q |
1 |
ctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctctccaccaatatctg |
63 |
Q |
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| T |
45596012 |
ctcatagcgcaagtgtaatgtgatataaggaccatatgatctcatcctctccaccaatatctg |
45596074 |
T |
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