View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9119_low_67 (Length: 206)
Name: NF9119_low_67
Description: NF9119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9119_low_67 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 34829507 - 34829302
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
34829507 |
ataagcaggtgctgctgaaggtctccatctttgcttggcggttgttgcgggacaggttgtcgattaagaataatcttctaagacgtggagtaatcaatgc |
34829408 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
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||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34829407 |
cgaagtagttatgtgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcagg |
34829308 |
T |
|
| Q |
201 |
tcttgg |
206 |
Q |
| |
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|||||| |
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|
| T |
34829307 |
tcttgg |
34829302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 26510409 - 26510614
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||| ||||||||||| | |||||||||||||||||| | |
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| T |
26510409 |
ataagcaagtgccgctgaaggtctccatctttgcttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaatac |
26510508 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
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|
||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26510509 |
cgaagcagttatgtgtgttacaggatgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcagg |
26510608 |
T |
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| Q |
201 |
tcttgg |
206 |
Q |
| |
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|||||| |
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| T |
26510609 |
tcttgg |
26510614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 5808801 - 5808732
Alignment:
| Q |
10 |
tgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttct |
79 |
Q |
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||||||| ||||| || |||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
5808801 |
tgccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttgccgactaagaataatcttct |
5808732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 33150942 - 33150878
Alignment:
| Q |
142 |
ctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcaggtcttgg |
206 |
Q |
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||||| |||| || |||||||| || |||||||| || |||||||||||| ||||||||||||| |
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| T |
33150942 |
ctgcgtctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttgg |
33150878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 11196439 - 11196234
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||||| ||||||||||| | |||| ||||| |||| |||||||||| ||||| ||||||||| |
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| T |
11196439 |
ataagcaggtgccgctgaaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatgg |
11196340 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
| |
|
||| ||| ||||||||||||||||||||| | || |||| |||| |||| || |||||||| || |||||||| ||| |||||||||||| ||||||| |
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| T |
11196339 |
cgaggcagttatgtgtgttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcagg |
11196240 |
T |
|
| Q |
201 |
tcttgg |
206 |
Q |
| |
|
|||||| |
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|
| T |
11196239 |
tcttgg |
11196234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 32624442 - 32624237
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
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|
|||||||||||||||||||||| ||||| |||| |||||| || ||| |||| | |||| ||||| |||| |||||||||| ||||| ||||||| | |
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| T |
32624442 |
ataagcaggtgccgctgaaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacgg |
32624343 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
| |
|
||| |||| ||||||||| ||||| |||| | ||||||| || | |||| || ||||||||||| |||||||| ||| |||||||||||| ||||||| |
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| T |
32624342 |
cgaggcatgtatgtgtgtcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcagg |
32624243 |
T |
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| Q |
201 |
tcttgg |
206 |
Q |
| |
|
|||||| |
|
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| T |
32624242 |
tcttgg |
32624237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6245215 - 6245010
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
| |
|
||||||||||||| || ||||| || |||||||||||||| ||| ||||||| | |||| |||| ||||||||||||| || || || || ||| |||| |
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|
| T |
6245215 |
ataagcaggtgccactaaaggtttctatctttgcttggcgattgatgcgagataggttgctgactaagaataatcttctgaggcgcggcgtgatcgatgc |
6245116 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
| |
|
|||||| | |||||| |||| |||| || ||||||||| || | ||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
6245115 |
tgaagcagcgttatgtgttgcaggttgcggcatggaagagtccacgacacacttatttcttcattgcgccactttcggtacattgtggcatcatatcagg |
6245016 |
T |
|
| Q |
201 |
tcttgg |
206 |
Q |
| |
|
| |||| |
|
|
| T |
6245015 |
tgttgg |
6245010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 9510751 - 9510679
Alignment:
| Q |
134 |
ggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcaggtcttgg |
206 |
Q |
| |
|
||||||||||||| | ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
9510751 |
ggaagagtctgcgacacacttatttcttcattgcgccactttcagtacattgtggcatcatatcaggtgttgg |
9510679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9510870 - 9510798
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataa |
73 |
Q |
| |
|
|||||||||||||| | ||||| || ||||||||||| |||||||||||||||| |||||||||| ||||||| |
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|
| T |
9510870 |
ataagcaggtgccgttaaaggtttctatctttgcttgacggttgttgcgagacaggttgtcgactaagaataa |
9510798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 20544173 - 20543968
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||||| || |||||||| | |||| ||||| |||| |||||||||| ||||| ||||||| | |
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|
| T |
20544173 |
ataagcaggtgccgctgaaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacgg |
20544074 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
| |
|
||| || ||||||||| |||||||||| | ||||||| || | |||| || |||||||| || |||||||| ||| |||||||||||| ||||||| |
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|
| T |
20544073 |
cgagacaagtatgtgtgtcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcagg |
20543974 |
T |
|
| Q |
201 |
tcttgg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
20543973 |
tcttgg |
20543968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 21367970 - 21368175
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||| ||||||| || ||| |||| | |||| ||||| |||| |||| ||||| ||||| ||||||| | |
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|
| T |
21367970 |
ataagtaggtgccgctgaaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggcataatcaacgg |
21368069 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
| |
|
||| |||| || ||||| |||||||||| | ||||||| || | || | | ||||||||||| |||||||| ||| |||||||||||| ||||||| |
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|
| T |
21368070 |
cgaggcatgtaattgtgtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggcatcttatcagg |
21368169 |
T |
|
| Q |
201 |
tcttgg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
21368170 |
tcttgg |
21368175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 26855801 - 26855598
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||| || ||||| || | |||| ||||| ||||| ||||| | || ||||| ||||||| |
|
|
| T |
26855801 |
ataagcaggtgccgctcaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacag |
26855702 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
| |
|
||| || | ||||||||| |||||||||| | ||||||| || | |||| | ||||||||||| ||||||| ||| | |||||||||| ||||||| |
|
|
| T |
26855701 |
cgaggcttgtatgtgtgtcacagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcagg |
26855602 |
T |
|
| Q |
201 |
tctt |
204 |
Q |
| |
|
|||| |
|
|
| T |
26855601 |
tctt |
26855598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 14687060 - 14687265
Alignment:
| Q |
1 |
ataagcaggtgccgctgaaggtctccatctttgcttggcggttgttgcgagacaagttgtcgactgagaataatcttctaagacgtggagtaatcaatgc |
100 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||| || ||||| || | |||| ||||| ||||| ||||| | || ||||| ||||||| |
|
|
| T |
14687060 |
ataagcaggtgccgcttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacag |
14687159 |
T |
|
| Q |
101 |
cgaagcatttatgtgtgttacagggtgcgacaaggaagagtctgcgcctcacttgtttattcattgtgccactttcggtacattgtggcatcatatcagg |
200 |
Q |
| |
|
|| | | ||||||||| |||||||||| ||||||| || | |||| | ||||||||||| ||||||| ||| | |||||||||| ||||||| |
|
|
| T |
14687160 |
tgaggtttgtatgtgtgtcacagggtgcggtgtggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcagg |
14687259 |
T |
|
| Q |
201 |
tcttgg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
14687260 |
tcttgg |
14687265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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