View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9120_high_1 (Length: 266)
Name: NF9120_high_1
Description: NF9120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9120_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 30772087 - 30771857
Alignment:
| Q |
20 |
tccatacaggcaaaccgaaaatgcaagaggagtaaacagaaaattagccgtaaagagattgtgaaagattattgttcaatatgtggaactagaagtaacc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30772087 |
tccatacaggcaaaccgaaaatgcaagaggagtaaacagaaaattagccgtaaagatattgtgaaagattattgttcaatatgtggaactagaagtaacc |
30771988 |
T |
|
| Q |
120 |
attaaaccatacctttcaccttttttgagtcaaaacctatggccgagctatatagtgttaatgccaaattggtcttgtgtcaatattaatgagcatttaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30771987 |
attaaaccatacctttcaccttttttgagtcaaaacctatggccgacatatatagtgttaatgccaaattggtcttgtgtcaatattaatgagcatttaa |
30771888 |
T |
|
| Q |
220 |
ggtttatttaaaagcgtgagatgtgattttt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30771887 |
ggtttatttaaaagcgtgagatgtgattttt |
30771857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University