View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9120_low_1 (Length: 513)

Name: NF9120_low_1
Description: NF9120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9120_low_1
NF9120_low_1
[»] chr7 (18 HSPs)
chr7 (190-397)||(47508857-47509067)
chr7 (397-513)||(496682-496798)
chr7 (398-513)||(11765707-11765822)
chr7 (396-513)||(48057683-48057800)
chr7 (398-513)||(42535198-42535313)
chr7 (398-513)||(2286458-2286573)
chr7 (396-513)||(25185917-25186034)
chr7 (190-330)||(35960115-35960258)
chr7 (405-513)||(23844642-23844750)
chr7 (425-513)||(7527248-7527336)
chr7 (48-112)||(47508697-47508760)
chr7 (398-513)||(31427244-31427361)
chr7 (62-112)||(35959967-35960017)
chr7 (396-513)||(40855135-40855253)
chr7 (275-320)||(7314249-7314294)
chr7 (278-320)||(16957264-16957306)
chr7 (275-320)||(7313084-7313129)
chr7 (285-337)||(42337064-42337117)
[»] chr1 (14 HSPs)
chr1 (396-513)||(20186825-20186942)
chr1 (398-513)||(30339636-30339751)
chr1 (395-513)||(51787269-51787387)
chr1 (404-513)||(9672956-9673062)
chr1 (398-511)||(43740393-43740506)
chr1 (190-320)||(24037916-24038048)
chr1 (210-313)||(43914927-43915032)
chr1 (217-313)||(30107002-30107099)
chr1 (278-312)||(1531656-1531690)
chr1 (278-320)||(16273743-16273785)
chr1 (278-320)||(16276967-16277009)
chr1 (278-320)||(22778640-22778682)
chr1 (275-320)||(52142882-52142927)
chr1 (192-267)||(43916172-43916247)
[»] chr2 (6 HSPs)
chr2 (396-513)||(13922183-13922300)
chr2 (401-513)||(11828960-11829072)
chr2 (190-320)||(42700963-42701097)
chr2 (278-336)||(27848332-27848391)
chr2 (210-267)||(3149155-3149212)
chr2 (278-320)||(33076257-33076299)
[»] chr3 (11 HSPs)
chr3 (402-513)||(49786397-49786508)
chr3 (398-513)||(8436880-8436995)
chr3 (389-513)||(8152967-8153094)
chr3 (398-513)||(47940826-47940941)
chr3 (396-506)||(29836761-29836870)
chr3 (190-313)||(45583168-45583294)
chr3 (278-313)||(6247404-6247439)
chr3 (193-330)||(2213924-2214066)
chr3 (278-320)||(40630628-40630670)
chr3 (278-312)||(52986252-52986286)
chr3 (225-266)||(38262289-38262330)
[»] chr5 (11 HSPs)
chr5 (399-513)||(38280257-38280371)
chr5 (396-513)||(25955944-25956061)
chr5 (397-513)||(42250115-42250231)
chr5 (398-513)||(1501353-1501468)
chr5 (217-337)||(16799858-16799979)
chr5 (398-506)||(7886355-7886463)
chr5 (192-309)||(183102-183221)
chr5 (192-330)||(2023334-2023474)
chr5 (192-336)||(2024209-2024357)
chr5 (280-320)||(4533146-4533186)
chr5 (280-320)||(5015131-5015171)
[»] chr4 (12 HSPs)
chr4 (395-513)||(52055132-52055250)
chr4 (397-513)||(1158239-1158355)
chr4 (190-267)||(34157107-34157185)
chr4 (48-111)||(34156958-34157022)
chr4 (418-513)||(49866670-49866765)
chr4 (217-310)||(10614826-10614919)
chr4 (278-330)||(6047065-6047118)
chr4 (217-267)||(46170365-46170416)
chr4 (278-320)||(1961173-1961215)
chr4 (278-320)||(56113758-56113800)
chr4 (275-320)||(31182630-31182675)
chr4 (278-318)||(18705396-18705436)
[»] chr8 (14 HSPs)
chr8 (398-513)||(4076928-4077043)
chr8 (403-513)||(3780343-3780453)
chr8 (190-320)||(23753272-23753406)
chr8 (198-336)||(44296716-44296857)
chr8 (48-112)||(23753522-23753585)
chr8 (193-337)||(26830320-26830468)
chr8 (205-330)||(44297743-44297869)
chr8 (278-320)||(45021650-45021692)
chr8 (278-330)||(39688988-39689041)
chr8 (193-242)||(39688900-39688950)
chr8 (275-312)||(39581998-39582035)
chr8 (278-319)||(44066732-44066773)
chr8 (284-320)||(6571339-6571375)
chr8 (280-320)||(35562257-35562297)
[»] chr6 (7 HSPs)
chr6 (396-513)||(33594503-33594620)
chr6 (193-320)||(3488047-3488174)
chr6 (278-320)||(20583030-20583072)
chr6 (278-320)||(15976625-15976667)
chr6 (278-320)||(15981021-15981063)
chr6 (278-320)||(20583977-20584019)
chr6 (278-318)||(14455043-14455083)
[»] scaffold0827 (2 HSPs)
scaffold0827 (49-112)||(3003-3066)
scaffold0827 (198-310)||(3206-3322)
[»] scaffold0008 (1 HSPs)
scaffold0008 (192-309)||(268435-268555)
[»] scaffold0151 (3 HSPs)
scaffold0151 (217-313)||(24826-24925)
scaffold0151 (217-313)||(37343-37442)
scaffold0151 (210-267)||(38293-38353)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 190 - 397
Target Start/End: Original strand, 47508857 - 47509067
Alignment:
Q  190 atgtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgccannnnnnn-aaaagggggtcaa 287  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||| |||||    
T  47508857 atgtggcgtgctatgtaggcttgaccaagtcaaaattgacgttttgcaaaaggggctagtcatggggtcacttttgccattttttttaaaagggagtcaa 47508956  T
Q  288 aattgcaacttttacaaacttaggggataaaaa-tgggtttaagtctaaaagatatctaatagaacaatgttggtatatcttacttattcatttaaaaag 386  Q
    ||||||||||||| ||||||||  ||||||||| ||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||| || |||    
T  47508957 aattgcaacttttgcaaacttaaaggataaaaaatggatttaagcctaaaagatatctaacataacaatgttggtatatcttacttattcattaaagaag 47509056  T
Q  387 taaatttctaa 397  Q
    |||||||||||    
T  47509057 taaatttctaa 47509067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 397 - 513
Target Start/End: Original strand, 496682 - 496798
Alignment:
Q  397 agagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 496  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  496682 agagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctct 496781  T
Q  497 tctctttcatccatctc 513  Q
    |||||||||||||||||    
T  496782 tctctttcatccatctc 496798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 398 - 513
Target Start/End: Original strand, 11765707 - 11765822
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11765707 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctctt 11765806  T
Q  498 ctctttcatccatctc 513  Q
    ||||||||||||||||    
T  11765807 ctctttcatccatctc 11765822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 396 - 513
Target Start/End: Complemental strand, 48057800 - 48057683
Alignment:
Q  396 aagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 495  Q
    |||||||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48057800 aagagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 48057701  T
Q  496 ttctctttcatccatctc 513  Q
    ||||||||||||||||||    
T  48057700 ttctctttcatccatctc 48057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 398 - 513
Target Start/End: Complemental strand, 42535313 - 42535198
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    ||||| ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  42535313 gagtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctctctt 42535214  T
Q  498 ctctttcatccatctc 513  Q
    ||||||||||||||||    
T  42535213 ctctttcatccatctc 42535198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 398 - 513
Target Start/End: Original strand, 2286458 - 2286573
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    |||| |||||||||| ||||| || | ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  2286458 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 2286557  T
Q  498 ctctttcatccatctc 513  Q
    |  |||||||||||||    
T  2286558 ccttttcatccatctc 2286573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 396 - 513
Target Start/End: Complemental strand, 25186034 - 25185917
Alignment:
Q  396 aagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 495  Q
    |||||||||||| |||| |||| ||||| || |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||| ||||||    
T  25186034 aagagtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctc 25185935  T
Q  496 ttctctttcatccatctc 513  Q
    |||  |||||||||||||    
T  25185934 ttccttttcatccatctc 25185917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 35960115 - 35960258
Alignment:
Q  190 atgtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgcca-nnnnnnnaaaagggggtcaa 287  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||        || ||||||  ||    
T  35960115 atgtggcgtgccatgtaggcttgaccaagtcaaaattgacgttttgcaaaaggggctaaacatggggtcacttttgccattttttttaatagggggctaa 35960214  T
Q  288 aattgcaacttttacaaacttaggggataaaaa-tgggtttaag 330  Q
    ||||||||||||| |||| ||||||| |||||| ||||||||||    
T  35960215 aattgcaacttttgcaaaattagggggtaaaaagtgggtttaag 35960258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 405 - 513
Target Start/End: Original strand, 23844642 - 23844750
Alignment:
Q  405 gatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctctttc 504  Q
    |||||||| ||| |||||| |  |||||||||| ||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||  ||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctcttccttttc 23844741  T
Q  505 atccatctc 513  Q
    |||||||||    
T  23844742 atccatctc 23844750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 425 - 513
Target Start/End: Complemental strand, 7527336 - 7527248
Alignment:
Q  425 tggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctctttcatccatctc 513  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||| ||||||||||||||| || | |||||||||||||    
T  7527336 tggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtctcttttttttttcatccatctc 7527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 47508697 - 47508760
Alignment:
Q  48 atgaaaataaagaggttgaagatgaagatgttttgccccctttttccagaattttaattcacgtg 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47508697 atgaaaataaagaggttgaagatgaagatgttttg-cccctttttccagaattttaattcacgtg 47508760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 398 - 513
Target Start/End: Complemental strand, 31427361 - 31427244
Alignment:
Q  398 gagtggtgatacatgtacacccatagatg--gcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 495  Q
    ||||||||||||||| ||| |||||| ||  ||||||| | |||||||||| |||||| |||||||| |||   ||||| ||||||||||||||||||||    
T  31427361 gagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctctc 31427262  T
Q  496 ttctctttcatccatctc 513  Q
    ||| || |||||||||||    
T  31427261 ttccctctcatccatctc 31427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 35959967 - 35960017
Alignment:
Q  62 gttgaagatgaagatgttttgccccctttttccagaattttaattcacgtg 112  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  35959967 gttgaagatgaagatgttttacccccttttttcagaattttaattcacgtg 35960017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 513
Target Start/End: Complemental strand, 40855253 - 40855135
Alignment:
Q  396 aagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtc-ctagaccccacaaacactttgtctct 494  Q
    ||||||| |||| |||| | | |||||  ||| ||| ||||||||||||| ||| |||||||||||  |||   ||||||| ||||||||||||||||||    
T  40855253 aagagtgatgatgcatgcatatccatatgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtctct 40855154  T
Q  495 cttctctttcatccatctc 513  Q
     ||| ||||||| ||||||    
T  40855153 tttccctttcattcatctc 40855135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 7314249 - 7314294
Alignment:
Q  275 aaaagggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||    
T  7314249 aaaagggggccaaaattgcaacttttgcaaacttagggggtaaaaa 7314294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 16957264 - 16957306
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  16957264 agggggccaaaattgcaacttttgcaaacttagggggtaaaaa 16957306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 7313129 - 7313084
Alignment:
Q  275 aaaagggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||| |||||||||||||||| |||||||| ||| ||||||    
T  7313129 aaaagggggccaaaattgcaacttttgcaaacttaaggggtaaaaa 7313084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 42337117 - 42337064
Alignment:
Q  285 caaaattgcaacttttacaaacttaggggataaaaa-tgggtttaagtctaaaa 337  Q
    |||||||||||||||| |||||||||||| |||||| || ||||||| ||||||    
T  42337117 caaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctaaaa 42337064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 396 - 513
Target Start/End: Complemental strand, 20186942 - 20186825
Alignment:
Q  396 aagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 495  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20186942 aagagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctc 20186843  T
Q  496 ttctctttcatccatctc 513  Q
    ||||||||||||||||||    
T  20186842 ttctctttcatccatctc 20186825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 398 - 513
Target Start/End: Original strand, 30339636 - 30339751
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 30339735  T
Q  498 ctctttcatccatctc 513  Q
    ||||||||||||||||    
T  30339736 ctctttcatccatctc 30339751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 395 - 513
Target Start/End: Original strand, 51787269 - 51787387
Alignment:
Q  395 taagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctct 494  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  51787269 taagagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctct 51787368  T
Q  495 cttctctttcatccatctc 513  Q
    |||||||||||| ||||||    
T  51787369 cttctctttcatgcatctc 51787387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 404 - 513
Target Start/End: Complemental strand, 9673062 - 9672956
Alignment:
Q  404 tgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctcttt 503  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  9673062 tgatacatgtacacctataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctaga-tccacaaacac--tgtctctcttctcttt 9672966  T
Q  504 catccatctc 513  Q
    ||||||||||    
T  9672965 catccatctc 9672956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 398 - 511
Target Start/End: Complemental strand, 43740506 - 43740393
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    |||||||||| |||| ||| ||||||||  ||| |||||||||||||||||| |||||||||| | ||| |||| ||| |||||||||||||||||||||    
T  43740506 gagtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctctt 43740407  T
Q  498 ctctttcatccatc 511  Q
    |  | |||||||||    
T  43740406 ccttatcatccatc 43740393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 24038048 - 24037916
Alignment:
Q  190 atgtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgccannnnnnn-aaaagggggtcaa 287  Q
    ||||||||||||| ||| | ||||||  |||||||| || |||||||||||| || ||  |||||||||||||||||||        |||||||||||||    
T  24038048 atgtggcatgccaagtatggttgaccgggtcaaaattgatgttttgcaaaagagggtaaacatggggtcacttttgccattttttttaaaagggggtcaa 24037949  T
Q  288 aattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||||||| |||||||| ||||||||||    
T  24037948 aattgcaacttttgcaaacttaagggataaaaa 24037916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 43915032 - 43914927
Alignment:
Q  210 ttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatgggg--tcacttttgccannnnnnnaaaagggggtcaaaattgcaacttttacaaac 306  Q
    |||||||||||||||| |||||||||||||||||| ||| |||||||  ||||||||||||       || |||||| |||||||||||| ||| |||||    
T  43915032 ttgaccaagtcaaaattgacgttttgcaaaagggg-tagacatggggggtcacttttgccatttttttaatagggggccaaaattgcaacctttgcaaac 43914934  T
Q  307 ttagggg 313  Q
    |||||||    
T  43914933 ttagggg 43914927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 30107002 - 30107099
Alignment:
Q  217 agtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgccannnnnnnaaaagggggtcaaaattgcaacttttacaaacttagggg 313  Q
    ||||||||| ||||||||| |||||||| ||| |||||||||||||||||||       || |||||  |||||||||||| ||| ||||||||||||    
T  30107002 agtcaaaattgacgttttgtaaaaggggatagacatggggtcacttttgccatttttttaacaggggaccaaaattgcaacatttgcaaacttagggg 30107099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 1531690 - 1531656
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggg 312  Q
    ||||||||||||||||||||||| |||||||||||    
T  1531690 agggggtcaaaattgcaacttttgcaaacttaggg 1531656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 16273785 - 16273743
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||    
T  16273785 agggggtcaaaattgcaacttttgcaaacttatggggtaaaaa 16273743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 16276967 - 16277009
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  16276967 agggggccaaaattgcaacttttgcaaacttagggggtaaaaa 16277009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 22778640 - 22778682
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  22778640 agggggccaaaattgcaacttttgcaaacttagggggtaaaaa 22778682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 52142927 - 52142882
Alignment:
Q  275 aaaagggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||| |||||||||||  |||||||||||||||||||| ||||||    
T  52142927 aaaagagggtcaaaattataacttttacaaacttagggggtaaaaa 52142882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 43916172 - 43916247
Alignment:
Q  192 gtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgcca 267  Q
    |||||||||||  || | |||||  ||||||||| |||||||||||||||||| ||| ||| |||||||||||||||    
T  43916172 gtggcatgccacatatgattgactgagtcaaaattgacgttttgcaaaaggggatagacat-gggtcacttttgcca 43916247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 396 - 513
Target Start/End: Original strand, 13922183 - 13922300
Alignment:
Q  396 aagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 495  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13922183 aagagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 13922282  T
Q  496 ttctctttcatccatctc 513  Q
    ||||||||||||||||||    
T  13922283 ttctctttcatccatctc 13922300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 401 - 513
Target Start/End: Original strand, 11828960 - 11829072
Alignment:
Q  401 tggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctc 500  Q
    |||||| ||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttgcctctctcctc 11829059  T
Q  501 tttcatccatctc 513  Q
    |||||||||||||    
T  11829060 tttcatccatctc 11829072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 42701097 - 42700963
Alignment:
Q  190 atgtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcat--ggggtcacttttgccannnnnnnaaa-agggggtc 285  Q
    ||||||||||||||| | | ||||||| |||||||| |  ||||||||||||||||||  |||  ||||||| ||||||||        || ||||||||    
T  42701097 atgtggcatgccatgcaagattgaccaggtcaaaattggggttttgcaaaaggggctaagcataaggggtcatttttgccattttttttaatagggggtc 42700998  T
Q  286 aaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||||| ||| |||||||||||| ||||||    
T  42700997 aaaattgcaacctttgcaaacttagggggtaaaaa 42700963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 27848391 - 27848332
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa-tgggtttaagtctaaa 336  Q
    |||||| |||||||||||||||| |||||||||||| |||||| || ||||||| |||||    
T  27848391 agggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctaaa 27848332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 3149155 - 3149212
Alignment:
Q  210 ttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgcca 267  Q
    |||||||||||||||| |||||||||||||| ||| ||| || ||||||||||||||||    
T  3149155 ttgaccaagtcaaaattgacgttttgcaaaa-gggatagacacggggtcacttttgcca 3149212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 33076257 - 33076299
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  33076257 agggggccaaaattgcaacttttgcaaacttagggggtaaaaa 33076299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 402 - 513
Target Start/End: Original strand, 49786397 - 49786508
Alignment:
Q  402 ggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctct 501  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49786397 ggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctct 49786496  T
Q  502 ttcatccatctc 513  Q
    ||||| ||||||    
T  49786497 ttcattcatctc 49786508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 398 - 513
Target Start/End: Complemental strand, 8436995 - 8436880
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  8436995 gagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctctt 8436896  T
Q  498 ctctttcatccatctc 513  Q
    ||||||||||||||||    
T  8436895 ctctttcatccatctc 8436880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 8152967 - 8153094
Alignment:
Q  389 aatttctaa-gagtggtgatacatgt--acacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacac 485  Q
    ||||||||| |||||||||||||| |  ||||| |||| |||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  8152967 aatttctaacgagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacac 8153066  T
Q  486 tttgtctctcttctctttcatccatctc 513  Q
    |||||||||||||||||| |||||||||    
T  8153067 tttgtctctcttctcttttatccatctc 8153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 398 - 513
Target Start/End: Original strand, 47940826 - 47940941
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    |||| |||||||||| ||||| || | ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  47940826 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 47940925  T
Q  498 ctctttcatccatctc 513  Q
    |  |||||||||||||    
T  47940926 ccttttcatccatctc 47940941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 396 - 506
Target Start/End: Complemental strand, 29836870 - 29836761
Alignment:
Q  396 aagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 495  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||| |||| |||  || |||| |||||||||| ||||||||||||    
T  29836870 aagagtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctc 29836772  T
Q  496 ttctctttcat 506  Q
    |||||| ||||    
T  29836771 ttctctctcat 29836761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 45583168 - 45583294
Alignment:
Q  190 atgtggcatgccatgtaggcttgaccaagtcaaaa-tgacgttttgcaaaaggggctagtcat--ggggtcacttttgcca-nnnnnnnaaaagggggtc 285  Q
    |||||||||||||||||||  |||||||||||||| ||||||||| ||||||||| ||| |||  | |||||||||| |||        || |||||| |    
T  45583168 atgtggcatgccatgtaggtatgaccaagtcaaaattgacgttttacaaaagggg-tagacataggaggtcacttttaccattttttttaatagggggcc 45583266  T
Q  286 aaaattgcaacttttacaaacttagggg 313  Q
    ||||||||||||||| ||||||||||||    
T  45583267 aaaattgcaacttttgcaaacttagggg 45583294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 6247439 - 6247404
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttagggg 313  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6247439 agggggtcaaaattgcaacttttgcaaacttagggg 6247404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 330
Target Start/End: Complemental strand, 2214066 - 2213924
Alignment:
Q  193 tggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatg--gggtcacttttgccannnnnnnaaa-agggggtcaaa 288  Q
    ||||||| || ||||||||||| |||||||||| |  ||||||||||||||||||  ||||  ||||  |||||||||        || |||||||||||    
T  2214066 tggcatgacacgtaggcttgactaagtcaaaattggggttttgcaaaaggggctaaacatgaggggtggcttttgccattttttttaatagggggtcaaa 2213967  T
Q  289 attgcaacttttacaaacttaggggat-aaaaatgggtttaag 330  Q
    ||||||||||||  ||||||||||| | |||| ||||||||||    
T  2213966 attgcaacttttgaaaacttagggggtcaaaagtgggtttaag 2213924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 40630628 - 40630670
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  40630628 agggggccaaaattgcaacttttgcaaacttagggggtaaaaa 40630670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 52986252 - 52986286
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggg 312  Q
    ||||||||||||||| |||||||||||||||||||    
T  52986252 agggggtcaaaattgtaacttttacaaacttaggg 52986286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 38262289 - 38262330
Alignment:
Q  225 tgacgttttgcaaaaggggctagtcatggggtcacttttgcc 266  Q
    ||||||||||||||||||| ||  ||||||||||||||||||    
T  38262289 tgacgttttgcaaaagggggtaaacatggggtcacttttgcc 38262330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 399 - 513
Target Start/End: Complemental strand, 38280371 - 38280257
Alignment:
Q  399 agtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 498  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 38280272  T
Q  499 tctttcatccatctc 513  Q
    |||||||||||||||    
T  38280271 tctttcatccatctc 38280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 396 - 513
Target Start/End: Complemental strand, 25956061 - 25955944
Alignment:
Q  396 aagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 495  Q
    ||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  25956061 aagagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 25955962  T
Q  496 ttctctttcatccatctc 513  Q
    |||  |||||||||||||    
T  25955961 ttccttttcatccatctc 25955944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 397 - 513
Target Start/End: Original strand, 42250115 - 42250231
Alignment:
Q  397 agagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 496  Q
    |||||||||||||||| ||||||||| ||| |||| ||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||    
T  42250115 agagtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctct 42250214  T
Q  497 tctctttcatccatctc 513  Q
    ||  |||||||||||||    
T  42250215 tccttttcatccatctc 42250231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 398 - 513
Target Start/End: Complemental strand, 1501468 - 1501353
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    ||||||||||||||| | | |||||| || ||||||||||||||||||||||||||||| ||||| ||  ||||||||||| | ||||||||||||||||    
T  1501468 gagtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttgtctctctt 1501369  T
Q  498 ctctttcatccatctc 513  Q
    ||||||||||||||||    
T  1501368 ctctttcatccatctc 1501353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 217 - 337
Target Start/End: Original strand, 16799858 - 16799979
Alignment:
Q  217 agtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgccannnnnnnaaaagggggtcaaaattgcaacttttacaaacttaggggat 315  Q
    ||||||||| ||| |||||||||||||| ||| | |||||||||||||||||       || ||||||||||||||||||||||| |||||||| ||||     
T  16799858 agtcaaaattgaccttttgcaaaagggg-tagacgtggggtcacttttgccatttttttaatagggggtcaaaattgcaacttttgcaaacttaagggac 16799956  T
Q  316 aaaaa-tgggtttaagtctaaaa 337  Q
    ||||| |||||||||| ||||||    
T  16799957 aaaaagtgggtttaagcctaaaa 16799979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 506
Target Start/End: Original strand, 7886355 - 7886463
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    |||||||||| |||| | ||  |||| || |||||||||||||||||||||| |||||||||||| ||| |||| | |||||| | | ||||||||||||    
T  7886355 gagtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctctt 7886454  T
Q  498 ctctttcat 506  Q
    | |||||||    
T  7886455 ccctttcat 7886463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 183102 - 183221
Alignment:
Q  192 gtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgcca-nnnnnnnaaaagggggtcaaaa 289  Q
    ||||| |||||  |||| |||||  ||||||||| |||||||||||||||||| ||| |||||||||||||||||||        || |||||| |||||    
T  183102 gtggcgtgccacataggattgactgagtcaaaattgacgttttgcaaaagggggtagacatggggtcacttttgccattttttttaatagggggccaaaa 183201  T
Q  290 ttgcaacttttacaaactta 309  Q
    ||||||||||| ||||||||    
T  183202 ttgcaacttttgcaaactta 183221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 330
Target Start/End: Complemental strand, 2023474 - 2023334
Alignment:
Q  192 gtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgcca-nnnnnnnaaaagggggtcaaaa 289  Q
    |||||||||||  || | |||||||||| ||||| |||||||||||||||||| |||  ||||||||||||||||||        || |||||| |||||    
T  2023474 gtggcatgccacatatggttgaccaagttaaaattgacgttttgcaaaagggg-tagatatggggtcacttttgccattttttttaatagggggccaaaa 2023376  T
Q  290 ttgcaacttttacaaacttaggggataaa-aatgggtttaag 330  Q
    |||||||||||  ||||||||||| |||| | ||||||||||    
T  2023375 ttgcaacttttgtaaacttagggggtaaatagtgggtttaag 2023334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 336
Target Start/End: Original strand, 2024209 - 2024357
Alignment:
Q  192 gtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcat--ggggtcacttttgccannnnnnnaaaagggggtcaaa 288  Q
    |||||||||||  || | |||||  ||||||||| |||||||||||||||||| ||| |||  ||| ||| ||||||||       || |||||  ||||    
T  2024209 gtggcatgccacatacggttgactgagtcaaaattgacgttttgcaaaagggggtagacataagggatcatttttgccatttttttaataggggaacaaa 2024308  T
Q  289 attgcaacttttacaaacttaggggataaaaa-tgggtttaagtctaaa 336  Q
    |||||||||||| |||||||||||| |||||| |||||||||| |||||    
T  2024309 attgcaacttttgcaaacttagggggtaaaaagtgggtttaagcctaaa 2024357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 4533186 - 4533146
Alignment:
Q  280 ggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||| |||||||||||||||| |||||||||||| ||||||    
T  4533186 ggggccaaaattgcaacttttgcaaacttagggggtaaaaa 4533146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 5015131 - 5015171
Alignment:
Q  280 ggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||| ||||||||||||||||||||||||| ||| ||||||    
T  5015131 ggggccaaaattgcaacttttacaaacttaagggttaaaaa 5015171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 395 - 513
Target Start/End: Complemental strand, 52055250 - 52055132
Alignment:
Q  395 taagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctct 494  Q
    |||||||||||||||||| |||  ||||| ||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  52055250 taagagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctct 52055151  T
Q  495 cttctctttcatccatctc 513  Q
    ||||  |||||||||||||    
T  52055150 cttccttttcatccatctc 52055132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 397 - 513
Target Start/End: Complemental strand, 1158355 - 1158239
Alignment:
Q  397 agagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 496  Q
    |||||| ||||||||| ||| | ||||| ||| |||||||||||||||||||| |||||||||||| ||| ||||||||| ||||||| |||||||||||    
T  1158355 agagtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctct 1158256  T
Q  497 tctctttcatccatctc 513  Q
    || ||||||| ||||||    
T  1158255 tccctttcattcatctc 1158239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 34157107 - 34157185
Alignment:
Q  190 atgtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgcca 267  Q
    ||||||| |||||||||| ||||||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||    
T  34157107 atgtggcgtgccatgtagacttgaccaagtcaaaattgaccttttgtaaaaggggctagacatggggtcacttttgcca 34157185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 34156958 - 34157022
Alignment:
Q  48 atgaaaataaagaggttgaagatgaagatgttttgccccc-tttttccagaattttaattcacgt 111  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||    
T  34156958 atgaaaataaagaggttcaagatgaagatgttttgcccccttttttctagaattttaattcacgt 34157022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 418 - 513
Target Start/End: Original strand, 49866670 - 49866765
Alignment:
Q  418 ccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctctttcatccatctc 513  Q
    |||||| ||| |||||| ||||||||| |||| ||| |||||||| ||| | |||||| || |||||||||||||||||||||||||||| |||||    
T  49866670 ccataggtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttctctttcatcgatctc 49866765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 10614919 - 10614826
Alignment:
Q  217 agtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgccannnnnnnaaaagggggtcaaaattgcaacttttacaaacttag 310  Q
    ||||||||| || ||||||||||||||| ||| |||||||||||||||||||       || |||||| |||||||||||||||| |||||||||    
T  10614919 agtcaaaattgatgttttgcaaaagggg-tagacatggggtcacttttgccatttttttaacagggggccaaaattgcaacttttgcaaacttag 10614826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 6047118 - 6047065
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa-tgggtttaag 330  Q
    |||||| |||||||||||||||| |||||||||||| |||||| ||||||||||    
T  6047118 agggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaag 6047065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 46170416 - 46170365
Alignment:
Q  217 agtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgcca 267  Q
    ||||||||| ||||||||||||||| || ||| |||||||||||||||||||    
T  46170416 agtcaaaattgacgttttgcaaaagagggtagacatggggtcacttttgcca 46170365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 1961173 - 1961215
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  1961173 agggggccaaaattgcaacttttgcaaacttagggggtaaaaa 1961215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 56113758 - 56113800
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  56113758 agggggccaaaattgcaacttttgcaaacttagggggtaaaaa 56113800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 31182675 - 31182630
Alignment:
Q  275 aaaagggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||  ||||||| ||||||||||||||||||||| ||||||    
T  31182675 aaaaggggaccaaaattacaacttttacaaacttaggggttaaaaa 31182630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 18705396 - 18705436
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaa 318  Q
    |||||||||||||||| |||||| |||||||||||| ||||    
T  18705396 agggggtcaaaattgctacttttgcaaacttagggggtaaa 18705436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 398 - 513
Target Start/End: Complemental strand, 4077043 - 4076928
Alignment:
Q  398 gagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 497  Q
    ||||| ||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||| ||||||||||||    
T  4077043 gagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtctctctt 4076944  T
Q  498 ctctttcatccatctc 513  Q
    |  |||||||||||||    
T  4076943 ccttttcatccatctc 4076928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 403 - 513
Target Start/End: Complemental strand, 3780453 - 3780343
Alignment:
Q  403 gtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttctctt 502  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| ||  |||| |||| | ||||||||||||||||||| |||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctcttccctt 3780354  T
Q  503 tcatccatctc 513  Q
    |||||||||||    
T  3780353 tcatccatctc 3780343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 23753406 - 23753272
Alignment:
Q  190 atgtggcatgccatgtaggcttgaccaagtcaaaa-tgacgttttgcaaaaggggctagtcatggg--gtcacttttgcca-nnnnnnnaaaagggggtc 285  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||   |||||  |||||||||||||        || |||||| |    
T  23753406 atgtggcatgccatgtaggcttgatcaagtcaaaattgacgttttgcaaaaggggataaatatgggatgtcacttttgccattttttttaatagggggcc 23753307  T
Q  286 aaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||||||||||||||||||||||||| ||||||    
T  23753306 aaaattgcaacttttacaaacttagggggtaaaaa 23753272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 198 - 336
Target Start/End: Complemental strand, 44296857 - 44296716
Alignment:
Q  198 tgccatgtaggcttgaccaagtcaaaa-tgacgttttgcaaaaggggctagtcatggggtcacttttgcca-nnnnnnnaaaagggggtcaaaattgcaa 295  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||||| ||||  |||||||||||||||||        | |||||| ||||||||||||    
T  44296857 tgccatgtaggcttgaccaagtcaaaattaacgttttacaaaaggggttagttctggggtcacttttgccattttttttagaaggggatcaaaattgcaa 44296758  T
Q  296 cttttacaaacttaggggataaaaa-tgggtttaagtctaaa 336  Q
    ||||| |||||||| ||| |||||| || ||||||| |||||    
T  44296757 cttttgcaaacttaaggggtaaaaagtgcgtttaagcctaaa 44296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 23753585 - 23753522
Alignment:
Q  48 atgaaaataaagaggttgaagatgaagatgttttgccccctttttccagaattttaattcacgtg 112  Q
    |||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  23753585 atgaaaatcaagaggttgaagatgaagaagctttgcccc-tttttccagaattttaattcacgtg 23753522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 26830468 - 26830320
Alignment:
Q  193 tggcatgccatgtaggcttgaccaagtcaaaa-tgacgttttgcaaaaggggctagtcatgggg--tcacttttgccannnnnnnaaaagggggtcaaaa 289  Q
    ||||||||||||||| |||||||||||||||| ||  ||||||||||||||| ||  |||||||  | ||||||||||       || ||||||||||||    
T  26830468 tggcatgccatgtagacttgaccaagtcaaaattggggttttgcaaaagggggtaaacatgggggataacttttgccatttttttaatagggggtcaaaa 26830369  T
Q  290 ttgcaacttttacaaacttaggggataaaaa-tgggtttaagtctaaaa 337  Q
    |||| || ||| ||||| |||||| |||||| || ||||||| ||||||    
T  26830368 ttgctacgtttgcaaacctagggggtaaaaagtgtgtttaagcctaaaa 26830320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 205 - 330
Target Start/End: Original strand, 44297743 - 44297869
Alignment:
Q  205 taggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgccannnnnnnaaaagggggtcaaaattgcaacttttaca 303  Q
    |||||||||| |||||||||| || ||||| ||||||||| ||  ||| |||||||||||||||       |||||||   |||||||||||||||||||    
T  44297743 taggcttgactaagtcaaaattgaggttttacaaaagggg-taaacatagggtcacttttgccatttttttaaaagggaaccaaaattgcaacttttaca 44297841  T
Q  304 aacttaggggat-aaaaatgggtttaag 330  Q
    |||||||||| | ||||||| |||||||    
T  44297842 aacttagggggtgaaaaatgcgtttaag 44297869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 45021650 - 45021692
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  45021650 agggggtcaaaattgcaacttttacaaacttagggggtaaaaa 45021692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 39688988 - 39689041
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggat-aaaaatgggtttaag 330  Q
    ||||||||||||||||||||||| |||| ||||||| | |||||||||||||||    
T  39688988 agggggtcaaaattgcaacttttgcaaatttagggggtcaaaaatgggtttaag 39689041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 39688900 - 39688950
Alignment:
Q  193 tggcatgccatgtaggcttgaccaagtcaaaa-tgacgttttgcaaaaggg 242  Q
    ||||||| || ||||||||||||||||||||| ||| ||||||||||||||    
T  39688900 tggcatgacacgtaggcttgaccaagtcaaaattgaggttttgcaaaaggg 39688950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 39581998 - 39582035
Alignment:
Q  275 aaaagggggtcaaaattgcaacttttacaaacttaggg 312  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  39581998 aaaagggggccaaaattgcaacttttgcaaacttaggg 39582035  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 44066732 - 44066773
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaa 319  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  44066732 agggggtcaaaattacaacttttgcaaacttaagggataaaa 44066773  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 6571375 - 6571339
Alignment:
Q  284 tcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  6571375 tcaaaattgcaacttttgcaaacttaagggataaaaa 6571339  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 35562297 - 35562257
Alignment:
Q  280 ggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||||||||||||||| ||||||||| || ||||||    
T  35562297 ggggtcaaaattgcaacttttgcaaacttagagggtaaaaa 35562257  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 396 - 513
Target Start/End: Complemental strand, 33594620 - 33594503
Alignment:
Q  396 aagagtggtgatacatgtacacccatagatggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 495  Q
    |||||| |||||||||| ||| |||| | |||||||||||||||||||| |||| |||||||||||| ||| ||||||||||||||| ||||||||||||    
T  33594620 aagagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtctctc 33594521  T
Q  496 ttctctttcatccatctc 513  Q
    |||  |||||||||||||    
T  33594520 ttccttttcatccatctc 33594503  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 3488174 - 3488047
Alignment:
Q  193 tggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatggggtcacttttgccannnnnnnaaaagggggtcaaaatt 291  Q
    ||||||| |||||||| ||||| |||||||||| || ||||||||||| ||| ||  |||||||||||||||||||       ||||||||  |||||||    
T  3488174 tggcatgacatgtaggattgacaaagtcaaaattgaagttttgcaaaaaggg-taaacatggggtcacttttgccatttttttaaaaggggaccaaaatt 3488076  T
Q  292 gcaacttttacaaacttaggggataaaaa 320  Q
     | |||||| |||||||||||||||||||    
T  3488075 tctacttttgcaaacttaggggataaaaa 3488047  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 20583072 - 20583030
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  20583072 agggggtcaaaattgcaacttttccaaacttaggggataaaaa 20583030  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 15976667 - 15976625
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||| |||||||||||||||||| |||||||||||| ||||||    
T  15976667 agggtgtcaaaattgcaacttttgcaaacttagggggtaaaaa 15976625  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 15981021 - 15981063
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  15981021 agggggccaaaattgcaacttttgcaaacttagggggtaaaaa 15981063  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 20583977 - 20584019
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaaaa 320  Q
    ||||||||||||||||||||||| ||||||||| || ||||||    
T  20583977 agggggtcaaaattgcaacttttgcaaacttagagggtaaaaa 20584019  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 14455083 - 14455043
Alignment:
Q  278 agggggtcaaaattgcaacttttacaaacttaggggataaa 318  Q
    |||||| ||||||||| ||||||| ||||||||||||||||    
T  14455083 agggggccaaaattgctacttttagaaacttaggggataaa 14455043  T

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Target: scaffold0827 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 3003 - 3066
Alignment:
Q  49 tgaaaataaagaggttgaagatgaagatgttttgccccctttttccagaattttaattcacgtg 112  Q
    ||||||| |||||||||||||||||||   ||| ||||||||||||||||||||||||||||||    
T  3003 tgaaaatcaagaggttgaagatgaagaaactttaccccctttttccagaattttaattcacgtg 3066  T

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Target: scaffold0827; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 198 - 310
Target Start/End: Original strand, 3206 - 3322
Alignment:
Q  198 tgccatgtaggcttgaccaagtcaaaa-tgacgttttgcaaaaggggctagtcatggg--gtcacttttgcca-nnnnnnnaaaagggggtcaaaattgc 293  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||| ||  ||||||  |||||||||||||        || ||||||||||||||||    
T  3206 tgccatgtaggcttgatcaagtcaaaattgacattttgcaaaaggggataaacatggggtgtcacttttgccattttctttaatagggggtcaaaattgc 3305  T
Q  294 aacttttacaaacttag 310  Q
    ||||||| |||||||||    
T  3306 aacttttgcaaacttag 3322  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 268555 - 268435
Alignment:
Q  192 gtggcatgccatgtaggcttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatgggg--tcacttttgccannnnnnnaaaagggggtcaaa 288  Q
    ||||| |||||  |||| |||||  ||||||||| |||||||||||||||||| ||| ||| |||  ||||||||||||       || |||||| ||||    
T  268555 gtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagggggtagacataggggatcacttttgccatttttttaatagggggccaaa 268456  T
Q  289 attgcaacttttacaaactta 309  Q
    |||||||||||| ||||||||    
T  268455 attgcaacttttgcaaactta 268435  T

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Target: scaffold0151 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 24925 - 24826
Alignment:
Q  217 agtcaaaat-gacgttttgcaaaaggggctagtcat-ggggtcacttttgcca-nnnnnnnaaaagggggtcaaaattgcaacttttacaaacttagggg 313  Q
    ||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||        || |||||| |||||||||||||| | ||||||||||||    
T  24925 agtcaaaattgacgttttgcaaaagggggtagacatgggggtcacttttgccattttttttaatagggggccaaaattgcaacttctgcaaacttagggg 24826  T

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Target: scaffold0151; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 37442 - 37343
Alignment:
Q  217 agtcaaaat-gacgttttgcaaaaggggctagtcat-ggggtcacttttgcca-nnnnnnnaaaagggggtcaaaattgcaacttttacaaacttagggg 313  Q
    ||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||        || |||||| |||||||||||||| | ||||||||||||    
T  37442 agtcaaaattgacgttttgcaaaagggggtagacatgggggtcacttttgccattttttttaatagggggccaaaattgcaacttctgcaaacttagggg 37343  T

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Target: scaffold0151; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 38293 - 38353
Alignment:
Q  210 ttgaccaagtcaaaat-gacgttttgcaaaaggggctagtcatg--gggtcacttttgcca 267  Q
    ||||| |||||||||| |||||||||||||||||| ||| ||||  |||||||||||||||    
T  38293 ttgactaagtcaaaattgacgttttgcaaaagggggtagacatggagggtcacttttgcca 38353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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