View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9120_low_2 (Length: 444)

Name: NF9120_low_2
Description: NF9120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9120_low_2
NF9120_low_2
[»] chr4 (4 HSPs)
chr4 (19-183)||(11115870-11116034)
chr4 (249-376)||(11116055-11116182)
chr4 (371-434)||(11116207-11116270)
chr4 (371-420)||(50858490-50858539)
[»] chr1 (5 HSPs)
chr1 (249-376)||(30092021-30092149)
chr1 (371-434)||(19477408-19477471)
chr1 (249-376)||(3158469-3158595)
chr1 (31-182)||(19477083-19477234)
chr1 (31-182)||(30092171-30092322)
[»] chr2 (1 HSPs)
chr2 (249-343)||(40492329-40492423)
[»] chr8 (4 HSPs)
chr8 (249-376)||(25938923-25939050)
chr8 (376-417)||(35285076-35285117)
chr8 (383-417)||(27978794-27978828)
chr8 (383-417)||(28036063-28036097)
[»] chr7 (6 HSPs)
chr7 (249-335)||(28841621-28841707)
chr7 (376-417)||(30502548-30502589)
chr7 (383-417)||(8118856-8118890)
chr7 (383-417)||(24226264-24226298)
chr7 (383-417)||(47081709-47081743)
chr7 (249-374)||(27804756-27804881)
[»] chr6 (1 HSPs)
chr6 (376-417)||(31029170-31029211)
[»] chr3 (4 HSPs)
chr3 (383-417)||(8566063-8566097)
chr3 (383-417)||(31809211-31809245)
chr3 (383-417)||(31935289-31935323)
chr3 (383-417)||(31973547-31973581)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 11115870 - 11116034
Alignment:
Q  19 gacgtgtcattgtcggaagccttaaactgcgtaggattaggattttgtattcagaatgagtttggaaaccttatcaaagcaaaaacaatgtggtccaatc 118  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11115870 gacgtgtcattttcggaagccttaaactgcgtaggatttggattttgtattcggaatgagtttggaaaccttatcaaagcaaaaacaatgtggtccaatc 11115969  T
Q  119 cagtttttgcttcagatgttggagaagctttgggtttatcaaacgctatccgttgggtgcatgag 183  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11115970 cagttttcgcttcagatgttggagaagctttgggtttatcaaacgctatccgttgggtgcatgag 11116034  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 249 - 376
Target Start/End: Original strand, 11116055 - 11116182
Alignment:
Q  249 ttttgagttggatgcaaaaaaggttgtagattattttaataacggtattaatgatatttccgagtttggctcaatagtggaggagtgccggagaagccgt 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11116055 ttttgagttggatgcaaaaaaggttgtagattattttaataacggtagtaatgatatttccgagtttggctcaatagtggaggagtgccggagaagccat 11116154  T
Q  349 aatttctattttgcaaactctaaggtag 376  Q
    ||||||||||||||||||||||||||||    
T  11116155 aatttctattttgcaaactctaaggtag 11116182  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 11116207 - 11116270
Alignment:
Q  371 aggtagctcacactcttgcacgagaggccacgtccttagctagtccccataattttaatgatgt 434  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11116207 aggtcgctcacactcttgcacaagaggccacgtccttagctagtccccataattttaatgatgt 11116270  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 50858490 - 50858539
Alignment:
Q  371 aggtagctcacactcttgcacgagaggccacgtccttagctagtccccat 420  Q
    |||| ||||| |||||||| |||||||||  |||||||||||||||||||    
T  50858490 aggtcgctcatactcttgctcgagaggccttgtccttagctagtccccat 50858539  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 30092149 - 30092021
Alignment:
Q  249 ttttgagttggatgcaaaaaaggttgtagattattttaataacggtattaatgatatttccgagtttggctcaatagt-ggaggagtgccggagaagccg 347  Q
    ||||||||| ||||||||||||||||||||||| || ||||  |||| |||||||||| | ||||||||  ||||||| ||||||||| ||||||||  |    
T  30092149 ttttgagttcgatgcaaaaaaggttgtagattacttcaatagaggtagtaatgatattactgagtttggagcaatagtgggaggagtgtcggagaagttg 30092050  T
Q  348 taatttctattttgcaaactctaaggtag 376  Q
    | || ||||||||| |||| |||||||||    
T  30092049 tgatctctattttgaaaacactaaggtag 30092021  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 19477408 - 19477471
Alignment:
Q  371 aggtagctcacactcttgcacgagaggccacgtccttagctagtccccataattttaatgatgt 434  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  19477408 aggtcgctcacactcttgcacgagaggccactttcttagctagtccccatacttttaatgatgt 19477471  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 3158595 - 3158469
Alignment:
Q  249 ttttgagttggatgcaaaaaaggttgtagattattttaataacggtattaatgatatttccgagtttggctcaatagtggaggagtgccggagaagccgt 348  Q
    |||| |||||||||| || ||||| ||||||||||||||||   ||  ||||||||| || ||||||||  |||||||||||||||| | ||||||  ||    
T  3158595 ttttaagttggatgcgaagaaggt-gtagattattttaatagaagtggtaatgatatatctgagtttggagcaatagtggaggagtgtcagagaagttgt 3158497  T
Q  349 aatttctattttgcaaactctaaggtag 376  Q
    ||| | ||||||| ||||||||||||||    
T  3158496 aatctttattttgaaaactctaaggtag 3158469  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 19477083 - 19477234
Alignment:
Q  31 tcggaagccttaaactgcgtaggattaggattttgtattcagaatgagtttggaaaccttatcaaagcaaaaacaatgtggtccaatccagtttttgctt 130  Q
    |||||||| ||||| || |||||||| ||||| || ||   |||||| |||||| |  ||||   ||||| |||||||||||| ||||| |||| | | |    
T  19477083 tcggaagctttaaattgtgtaggatttggattctgcatcaggaatgaatttggagaatttattcgagcaagaacaatgtggtcgaatcctgtttgtccgt 19477182  T
Q  131 cagatgttggagaagctttgggtttatcaaacgctatccgttgggtgcatga 182  Q
    | ||||||||||||||||||||  | ||| |||| |||||||||||||||||    
T  19477183 cggatgttggagaagctttgggactttcatacgccatccgttgggtgcatga 19477234  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 30092322 - 30092171
Alignment:
Q  31 tcggaagccttaaactgcgtaggattaggattttgtattcagaatgagtttggaaaccttatcaaagcaaaaacaatgtggtccaatccagtttttgctt 130  Q
    ||||| || |||||||| || || || || ||||| |||| | |||||  ||||||| |||| | |||||||||||||||||| ||||| |||| | |      
T  30092322 tcggatgctttaaactgtgttggttttggtttttgcattcgggatgaggctggaaactttataagagcaaaaacaatgtggtcgaatccggtttgttcaa 30092223  T
Q  131 cagatgttggagaagctttgggtttatcaaacgctatccgttgggtgcatga 182  Q
    ||||||| ||||||||| ||||  | ||| | |||||||| |||||||||||    
T  30092222 cagatgtcggagaagctctgggactctcacatgctatccgatgggtgcatga 30092171  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 343
Target Start/End: Original strand, 40492329 - 40492423
Alignment:
Q  249 ttttgagttggatgcaaaaaaggttgtagattattttaataacggtattaatgatatttccgagtttggctcaatagtggaggagtgccggagaa 343  Q
    |||||||||||||||||| || ||||||||||||||||| || |||  |||||| ||||| ||||||||  ||||||| ||||| || |||||||    
T  40492329 ttttgagttggatgcaaagaaagttgtagattattttaacaaaggtcataatgacatttctgagtttggagcaatagttgaggaatgtcggagaa 40492423  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 376
Target Start/End: Original strand, 25938923 - 25939050
Alignment:
Q  249 ttttgagttggatgcaaaaaaggttgtagattattttaataacggtattaatgatatttccgagtttggctcaatagtggaggagtgccggagaagccgt 348  Q
    |||||| |||||||| || || |||||||||||||||||||  || |  ||||||||  ||||||||||  ||||||||||||||||  | |||||  ||    
T  25938923 ttttgaattggatgccaagaaagttgtagattattttaatagaggaaacaatgatataaccgagtttggagcaatagtggaggagtgtagaagaagttgt 25939022  T
Q  349 aatttctattttgcaaactctaaggtag 376  Q
    ||| | || |||| ||||||||||||||    
T  25939023 aatctttactttgaaaactctaaggtag 25939050  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 35285076 - 35285117
Alignment:
Q  376 gctcacactcttgcacgagaggccacgtccttagctagtccc 417  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  35285076 gctcatactcttgcacgagaggccacgtccttagctagtccc 35285117  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 27978794 - 27978828
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  27978794 ctcttgcacgagaggccacgtctttagctagtccc 27978828  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 28036063 - 28036097
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  28036063 ctcttgcacgagaggccacgtctttagctagtccc 28036097  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 28841707 - 28841621
Alignment:
Q  249 ttttgagttggatgcaaaaaaggttgtagattattttaataacggtattaatgatatttccgagtttggctcaatagtggaggagtg 335  Q
    |||||||||||||||||||||||||||| |||| || ||||  ||||| ||||||||  | || |||||  ||||||||||||||||    
T  28841707 ttttgagttggatgcaaaaaaggttgtatattacttcaatagaggtataaatgatatacctgaatttggagcaatagtggaggagtg 28841621  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 30502548 - 30502589
Alignment:
Q  376 gctcacactcttgcacgagaggccacgtccttagctagtccc 417  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  30502548 gctcatactcttgcaagagaggccacgtccttagctagtccc 30502589  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 8118890 - 8118856
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  8118890 ctcttgcacgagaggccacgtctttagctagtccc 8118856  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 24226298 - 24226264
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  24226298 ctcttgcacgagaggccacgtctttagctagtccc 24226264  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 47081743 - 47081709
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  47081743 ctcttgcacgagaggccacgtctttagctagtccc 47081709  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 374
Target Start/End: Complemental strand, 27804881 - 27804756
Alignment:
Q  249 ttttgagttggatgcaaaaaaggttgtagattattttaataacggtattaatgatatttccgagtttggctcaatagtggaggagtgccggagaagccgt 348  Q
    ||||||| |||||||||| || |||||||| | |||||| ||  ||| ||||||| | ||||||||||| |||||  ||||||| |||   ||| |||||    
T  27804881 ttttgagatggatgcaaagaaagttgtagacttttttaacaaaagtagtaatgatgtgtccgagtttggttcaattttggaggaatgcaaaagatgccgt 27804782  T
Q  349 aatttctattttgcaaactctaaggt 374  Q
    ||| | | ||| | ||||||||||||    
T  27804781 aatgtttttttcgaaaactctaaggt 27804756  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 31029170 - 31029211
Alignment:
Q  376 gctcacactcttgcacgagaggccacgtccttagctagtccc 417  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  31029170 gctcatactcttgcacgagaggccacgtccttagctagtccc 31029211  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 8566063 - 8566097
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  8566063 ctcttgcacgagaggccacgtctttagctagtccc 8566097  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 31809211 - 31809245
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  31809211 ctcttgcacgagaggccacgtctttagctagtccc 31809245  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 31935289 - 31935323
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  31935289 ctcttgcacgagaggccacgtctttagctagtccc 31935323  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 31973547 - 31973581
Alignment:
Q  383 ctcttgcacgagaggccacgtccttagctagtccc 417  Q
    |||||||||||||||||||||| ||||||||||||    
T  31973547 ctcttgcacgagaggccacgtctttagctagtccc 31973581  T

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