View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9120_low_3 (Length: 407)
Name: NF9120_low_3
Description: NF9120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9120_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 46574291 - 46573915
Alignment:
| Q |
16 |
caccaaaaatacacgcatattttcactataactaatttgttcttgatgtggacatatgctgtctgattgtgactagtccagtgtaaatattgcaccacaa |
115 |
Q |
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| T |
46574291 |
caccaaacatacacgcatattttcactataactaatttgttcttgatgtggacatatgctgtctgattgtgactagtccagtgtaaatattgcaccacaa |
46574192 |
T |
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| Q |
116 |
cacactacagcagaccaaggatgaatccagatttgttgcactagaaaacactgtttgaaacaaaattgaatttaacacagaaacttggaatgcgaaacgt |
215 |
Q |
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| T |
46574191 |
cacactacagcagaccaaggatgaatccagatttgttgcactaaaaaacactggttgaaacaaaattgaatttaacacagaaacttggaatgcgaaacgt |
46574092 |
T |
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| Q |
216 |
ttgtttttcatctatgcttcatttttactgcagtaagtatggatttggtacttcgattgttgatcctgatttttattctaatgatagatttcaagagggg |
315 |
Q |
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| T |
46574091 |
ttgtttttcatctatgcttcatttttactgcagtaattatggatttggtacttcgattgttgatcctgttttttattctaatgatagatttcaagagggg |
46573992 |
T |
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| Q |
316 |
tgcttagaaaaatagatgataattaattagatttagatgcttggttatgaagttacgtaaagctaatgcttggtgat |
392 |
Q |
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| T |
46573991 |
tgcttagaaaaatagatgataattaattagatttagatgcttggttatgaagttacgtaaagctaatgcttggtgat |
46573915 |
T |
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