View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9121_high_3 (Length: 332)

Name: NF9121_high_3
Description: NF9121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9121_high_3
NF9121_high_3
[»] chr4 (1 HSPs)
chr4 (13-332)||(40595277-40595591)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 40595277 - 40595591
Alignment:
Q  13 agctgtactagtagtcttgttggattttctcagcattctgactctgatcccaactggatattcctatcccattgttgttctagacatgtccttcaattat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40595277 agctgtactagtagtcttgttggattttctcagcattctgactctgatcccaactggatattcctatcccattgttgttctagacatgtccttcaattat 40595376  T
Q  113 tcattcacctcttctatactttgcaaattgcaagtcttgcaagattttggccgattttatttatgctctctttttaattattagggttagaacattcaca 212  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40595377 tcattcacctcttctatactttgcaaattgc---------aagattttggccgattttatttatgctctctttttaattattagggttagaacattcaca 40595467  T
Q  213 tgtttatagagattcttttgtgaaaattatgtattaac----ttagaaccaagtaattaatttgtttaaattcacttgattttcttctttttcaatttga 308  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40595468 tgtttatagagattcttttgtgaaaattatgtattaacttaattagaaccaagtatttaatttgtttaaattcacttgattttcttctttttcaatttga 40595567  T
Q  309 acaactcaccaatatcaaatgctt 332  Q
    ||||||||||||||||||||||||    
T  40595568 acaactcaccaatatcaaatgctt 40595591  T

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