View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9121_low_1 (Length: 690)
Name: NF9121_low_1
Description: NF9121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9121_low_1 |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 300 - 690
Target Start/End: Complemental strand, 28129231 - 28128841
Alignment:
| Q |
300 |
tcacatgtcgttctttacctctccagacatcatatcaatagactcaaggtaagagacagtttcctgagcaaatatgaccggtgcatactcatccctaacc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28129231 |
tcacatgtcgttctttacctctccagacatcatatcaatagactcaaggtaagagacagtttactgagcaaatatgaccggtgcatactcatccctaacc |
28129132 |
T |
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| Q |
400 |
ggtgaagcctctctttccattgtctttatataaccactccatgctgcttctgaaaccgctctctttccaacgtagggtggtttgtgaaacatagaaataa |
499 |
Q |
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| T |
28129131 |
ggtgaagcctcactttccattgtctttatataaccactccatgctgcttctgaaaccgctctctttccaacgtagggtggtttgtgaaacatagaaataa |
28129032 |
T |
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| Q |
500 |
agttatctataaaaccaacgtgtgtgacgaagaggctgaaacaaatgactttacattgtaacttttaaaagcattgcgatgaaaagcgaagaacagtcaa |
599 |
Q |
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| T |
28129031 |
agttatctataaaaccaacgtgtgtgacgaagaggctgaaacaaatgactttacattgtaacttttaaaagcattgcgatgaaaagcgaagaacggtcaa |
28128932 |
T |
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| Q |
600 |
taacgagaatgtggtgctcgtcatcattagaaacctttgaaagcgaatcgacattatggagaagaacagaaagattggaaccgagactttc |
690 |
Q |
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| T |
28128931 |
taacgagaatgtggtgctcgtcatcattagaaacctttgaaagcgaatagacattatggagaagaacagaaagattggaaccgagactttc |
28128841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 28129649 - 28129359
Alignment:
| Q |
12 |
gataatactaatggtggcattgacggattaactgttccttaataaaatgctaataatgtacctaagatttttatactaaatacaaccttcatcctctaat |
111 |
Q |
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||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28129649 |
gataacactaatggtggcattggtggattaactgttgcttaataaaatgctaataatgtacctaagatttttatactaaacacaaccttcatcctctaat |
28129550 |
T |
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| Q |
112 |
tactcatatgaaacataagaaaaaagattctaaaaacaaaaggcttataattagtgaaataaggatataccctgcggtcgctttaatgagctcttctgtt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129549 |
tactcatatgaaacataagaaaaaagattctaaaaacaaaaggctgacaattagtgaaataaggatataccctgcggtcgctttaatgagctcttctgtt |
28129450 |
T |
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| Q |
212 |
gttgggttgggagggagcttagatttgcaaacaggaaatgttaaaaccacaccaagatgatgagaacccaacaacctaaaagggctagtca |
302 |
Q |
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| T |
28129449 |
gttgggttgggagggaacttagatttgtaaacaggaaatgttaaaaccacaccaagatgatgagaacccaacaacctaaaagggctagtca |
28129359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 523
Target Start/End: Complemental strand, 28178765 - 28178715
Alignment:
| Q |
474 |
gggtggtttgtgaaacatagaaa-taaagttatctataaaaccaacgtgtg |
523 |
Q |
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| T |
28178765 |
gggtggtttgtgaaacagagaaaataaacttatctataaaaccaacttgtg |
28178715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 44822077 - 44822367
Alignment:
| Q |
12 |
gataatactaatggtggcattgacggattaactgttccttaataaaatgctaataatgtacctaagatttttatactaaatacaaccttcatcctctaat |
111 |
Q |
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||||| |||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
44822077 |
gataacactaatagtggcattgacagattaactgctgcttaataaaatgctaataatgtacctaaaatttttatactaaacacaaccttcatcctctaat |
44822176 |
T |
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| Q |
112 |
tactcatatgaaacataagaaaaaagattctaaaaacaaaaggcttataattagtgaaataaggatataccctgcggtcgctttaatgagctcttctgtt |
211 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44822177 |
tactaatatgaaacataagaaaaaagattctaaaaacaaaaagctgacaattagtgaaataagcatataccctgcggtcgctttaatgagctcttctgtt |
44822276 |
T |
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| Q |
212 |
gttgggttgggagggagcttagatttgcaaacaggaaatgttaaaaccacaccaagatgatgagaacccaacaacctaaaagggctagtca |
302 |
Q |
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| T |
44822277 |
gttgggttgggagggagcttagatttgtaaacaggaaatgttaaaaccacaccgagatgatgagaacccaacaacctaaaagggctagtca |
44822367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 305 - 467
Target Start/End: Original strand, 44822507 - 44822667
Alignment:
| Q |
305 |
tgtcgttctttacctctccagacatcatatcaatagactcaaggtaagagacagtttcctgagcaaatatgaccggtgcatactcatccctaaccggtga |
404 |
Q |
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| T |
44822507 |
tgtcgttctttacctctccagacatcatatcaatagactcaaggtaagagacagtttcctgagcaaatatgaccggtgcatactcatccctaaccggtga |
44822606 |
T |
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| Q |
405 |
agcctctctttccattgtctttatataaccactccatgctgcttctgaaaccgctctctttcc |
467 |
Q |
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| T |
44822607 |
agcctctctttccattgtctt--tataaccactccatgctgcttctcaaactgctctctttcc |
44822667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 690
Target Start/End: Original strand, 20026645 - 20026712
Alignment:
| Q |
623 |
tcattagaaacctttgaaagcgaatcgacattatggagaagaacagaaagattggaaccgagactttc |
690 |
Q |
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|||||||||||| ||||||||||||| |||||| | |||||||||| ||||| |||| |||||||| |
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| T |
20026645 |
tcattagaaacccttgaaagcgaatcaacattaggaagaagaacagcgagattagaacgaagactttc |
20026712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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