View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9121_low_15 (Length: 252)
Name: NF9121_low_15
Description: NF9121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9121_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 8534261 - 8534479
Alignment:
| Q |
15 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8534261 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaa |
8534360 |
T |
|
| Q |
115 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8534361 |
ggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8534460 |
T |
|
| Q |
215 |
accgcaagaccgtatatat |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8534461 |
accgcaagaccgtatatat |
8534479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 8599500 - 8599718
Alignment:
| Q |
15 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8599500 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaa |
8599599 |
T |
|
| Q |
115 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8599600 |
ggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8599699 |
T |
|
| Q |
215 |
accgcaagaccgtatatat |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8599700 |
accgcaagaccgtatatat |
8599718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 8613926 - 8613708
Alignment:
| Q |
15 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8613926 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagtatagcaaccaatatcgggggcacaagaggtaagaa |
8613827 |
T |
|
| Q |
115 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8613826 |
ggttgctctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8613727 |
T |
|
| Q |
215 |
accgcaagaccgtatatat |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8613726 |
accgcaagaccgtatatat |
8613708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 14751921 - 14752088
Alignment:
| Q |
22 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
121 |
Q |
| |
|
|||||||||||| |||||||| || || ||||||||||| ||||| || ||| | |||||||| || ||||| || |||||||| |||| ||| || || |
|
|
| T |
14751921 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcgacgaatatgggtggcacaagcggtaggaacgtgact |
14752020 |
T |
|
| Q |
122 |
ctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacc |
189 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||| || |||||||| |
|
|
| T |
14752021 |
ttgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacc |
14752088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University