View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9121_low_17 (Length: 251)
Name: NF9121_low_17
Description: NF9121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9121_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40131945 - 40132170
Alignment:
| Q |
1 |
ccttcactgcaataagaacaaatctgcgccatgtgagatatta---attctaacaataaatctgatccaagcataaaaataatatcttctataatggaac |
97 |
Q |
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| T |
40131945 |
ccttcactgcaataagaacaaatctgagccatgtgagatattattaattctaacaataaatctgatccaagcataaaaataatat-------------ac |
40132031 |
T |
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| Q |
98 |
catacaccnnnnnnnnnnnncactcgaaactttaaacaaatgaataagttttagttaccctcttgagtgttgagctttagtgtagctgctgaagcaaagt |
197 |
Q |
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| T |
40132032 |
catacaccaaaaagaaaaaacactcgaaactt-aaacaaatgaataagttttagttaccctcttgagtgttgagctttagtgtagctgctgaagcaaagt |
40132130 |
T |
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| Q |
198 |
gtgagatgaaaatcaatgaagtgaaaccaaagagaagtac |
237 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
40132131 |
gtgagatgaaaatcaatgaagtgaaaccgaagagaagtac |
40132170 |
T |
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