View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9121_low_18 (Length: 244)

Name: NF9121_low_18
Description: NF9121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9121_low_18
NF9121_low_18
[»] chr5 (2 HSPs)
chr5 (57-126)||(33699975-33700044)
chr5 (57-120)||(36193822-36193885)
[»] chr3 (4 HSPs)
chr3 (57-126)||(54383664-54383733)
chr3 (82-126)||(41409799-41409843)
chr3 (57-126)||(38360172-38360241)
chr3 (59-120)||(8913940-8914001)
[»] chr8 (5 HSPs)
chr8 (57-126)||(10335362-10335431)
chr8 (57-123)||(39823432-39823498)
chr8 (57-120)||(43899091-43899154)
chr8 (82-125)||(11796670-11796713)
chr8 (57-126)||(28321011-28321080)
[»] chr7 (4 HSPs)
chr7 (57-126)||(22609883-22609952)
chr7 (58-120)||(46205837-46205899)
chr7 (57-126)||(37961602-37961671)
chr7 (59-126)||(29772428-29772495)
[»] chr4 (6 HSPs)
chr4 (137-236)||(21317585-21317684)
chr4 (82-125)||(42989750-42989793)
chr4 (57-126)||(4641601-4641670)
chr4 (82-126)||(16182244-16182288)
chr4 (82-120)||(2933663-2933701)
chr4 (76-126)||(40262459-40262509)
[»] chr6 (4 HSPs)
chr6 (57-126)||(34576148-34576217)
chr6 (58-126)||(9961146-9961214)
chr6 (57-126)||(14113395-14113464)
chr6 (82-126)||(33029731-33029775)
[»] chr1 (5 HSPs)
chr1 (57-126)||(6797497-6797566)
chr1 (58-126)||(47030428-47030496)
chr1 (59-126)||(50797990-50798057)
chr1 (62-126)||(1141554-1141618)
chr1 (57-126)||(26028970-26029039)
[»] chr2 (2 HSPs)
chr2 (57-123)||(33425104-33425170)
chr2 (57-126)||(40611647-40611716)
[»] scaffold0063 (1 HSPs)
scaffold0063 (57-118)||(35769-35830)
[»] scaffold0227 (1 HSPs)
scaffold0227 (82-126)||(5043-5087)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 33700044 - 33699975
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  33700044 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttggttgtacatataacacaactc 33699975  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 36193822 - 36193885
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataaca 120  Q
    |||||||  ||||| ||| ||| | |||||||||||||||||||||||| ||||||||||||||    
T  36193822 gcgtgctcttcacaatattaaaaggtgttgcattagttgttcaattttgattgtacatataaca 36193885  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 54383733 - 54383664
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54383733 gcgtgcttctcacgttatcaaaggatgttgcattagttgttcaattttggttgtacatataacacaactc 54383664  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 41409843 - 41409799
Alignment:
Q  82 tgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  41409843 tgttgcattagttgttcaattttgattgtacatataacacaactc 41409799  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 38360241 - 38360172
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||| |||||| | ||||| | |||||||| | |||| |||||||||||||||||||||||||||||    
T  38360241 gcgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggttgtacatataacacaactc 38360172  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 8913940 - 8914001
Alignment:
Q  59 gtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataaca 120  Q
    ||||| |||||| ||| ||| | |||||||||||||||||||||||| ||||||| ||||||    
T  8913940 gtgctcctcacaatattaaaggttgttgcattagttgttcaattttgattgtacaaataaca 8914001  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 10335431 - 10335362
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  10335431 gcgtgcttctcacattatcaaagagtgttgcattagttgttcaattttggttgtacatataacacaactc 10335362  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 39823432 - 39823498
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaa 123  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  39823432 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttggttgtacatgtaacacaa 39823498  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 43899091 - 43899154
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataaca 120  Q
    ||||||| || ||| ||| ||| | |||||||||||||||||||||||||||||||| ||||||    
T  43899091 gcgtgctccttacagtattaaagggtgttgcattagttgttcaattttggttgtacaaataaca 43899154  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 11796670 - 11796713
Alignment:
Q  82 tgttgcattagttgttcaattttggttgtacatataacacaact 125  Q
    |||||||| |||||| |||||||||||||||| |||||||||||    
T  11796670 tgttgcataagttgtacaattttggttgtacaaataacacaact 11796713  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 28321080 - 28321011
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||| ||||||   ||||| | |||||||| |||||| |||||||  ||||||||||||||||||||    
T  28321080 gcgtgctcctcacaaagtcaaaggttgttgcataagttgtccaattttaattgtacatataacacaactc 28321011  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 22609883 - 22609952
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||    
T  22609883 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttggttgtacatataatacaactc 22609952  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 46205899 - 46205837
Alignment:
Q  58 cgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataaca 120  Q
    |||||| |||||| ||| ||| | ||||||||||||||| |||||||||||||||||||||||    
T  46205899 cgtgctcctcacaatattaaaaggtgttgcattagttgtccaattttggttgtacatataaca 46205837  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 37961602 - 37961671
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||| |||||| | ||||| | |||||||| | |||| |||||||||||||||||||||||||||||    
T  37961602 gcgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggttgtacatataacacaactc 37961671  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 29772428 - 29772495
Alignment:
Q  59 gtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||| |||||| ||||||| | |||||||| |||||||||||| || |||||||||||||| |||||    
T  29772428 gtgctcctcacaatatcaaaagttgttgcataagttgttcaattctgattgtacatataacataactc 29772495  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 21317684 - 21317585
Alignment:
Q  137 aatgttattggtaatacaaaaagtgttacaaagagaaaccaattttgtgacannnnnnnaatgttattgatgatacaaaaagtgttataaaaatataaag 236  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||       ||||||||||  |||||||||||||||| ||||||||||||    
T  21317684 aatgttattggtaatacaaaaagagttacaaagagaatccacttttgtgacatttttttaatgttattggcgatacaaaaagtgttacaaaaatataaag 21317585  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 42989793 - 42989750
Alignment:
Q  82 tgttgcattagttgttcaattttggttgtacatataacacaact 125  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  42989793 tgttgcattagttgttcaattttggttgtacaaataatacaact 42989750  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 4641670 - 4641601
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    |||||||||||||| | ||||| | |||||||| | || | ||||||||||||||||||| |||||||||    
T  4641670 gcgtgcttctcacaatgtcaaaggttgttgcataaattatccaattttggttgtacatattacacaactc 4641601  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 16182288 - 16182244
Alignment:
Q  82 tgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||    
T  16182288 tgttgcattagttgtccaattttggttgtacgaataacacaactc 16182244  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 2933663 - 2933701
Alignment:
Q  82 tgttgcattagttgttcaattttggttgtacatataaca 120  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  2933663 tgttacattagttgttcaattttggttgtacaaataaca 2933701  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 40262459 - 40262509
Alignment:
Q  76 aaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||| ||||||||||||||| ||||||| | |||||| ||||||||||||    
T  40262459 aaatggtgttgcattagttgtccaattttagatgtacaaataacacaactc 40262509  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 34576217 - 34576148
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||    
T  34576217 gcgtgcttctcacattatcaaaaggtgttgcattagttgttcaattttgattgtatatataacacaactc 34576148  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 9961214 - 9961146
Alignment:
Q  58 cgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||||||||| | | | ||| |||| ||||| |||||||||||| |||||||| ||||||||||||    
T  9961214 cgtgcttctcacaatgttatatggtgttacattaattgttcaattttagttgtacaaataacacaactc 9961146  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 14113395 - 14113464
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||| |||||| ||||||| | |||||||| | || | |||||||  ||||||||||||||||||||    
T  14113395 gcgtgctcctcacaatatcaaaggttgttgcataaattatccaattttaattgtacatataacacaactc 14113464  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 33029731 - 33029775
Alignment:
Q  82 tgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    |||||| |||||||| |||||||||||||| | ||||||||||||    
T  33029731 tgttgcgttagttgtccaattttggttgtataaataacacaactc 33029775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 6797497 - 6797566
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||    
T  6797497 gcgtgcttctcacattattaaagggtgttgcattagttgttcaattttagttgtacatataacacaactc 6797566  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 47030496 - 47030428
Alignment:
Q  58 cgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||| |||||||    
T  47030496 cgtgcttctcacattatcaatggttgttgcattagttgttcaattttggttgtacatataaaacaactc 47030428  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 50798057 - 50797990
Alignment:
Q  59 gtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    |||||||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||    
T  50798057 gtgcttctcacattatcaaagggtgttgcatttgtcgttcaattttggttgtacatataacacaactc 50797990  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 1141554 - 1141618
Alignment:
Q  62 cttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||| ||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||    
T  1141554 cttcttacattattaaagggtgttgcattagttattcaattttggttgtacatataacacaactc 1141618  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 26029039 - 26028970
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||| |||||||| |||||   ||||| || |||||| ||||||| |||||||| ||||||||||||    
T  26029039 gcgtgctcctcacattgtcaaagattgttgtataagttgtacaattttagttgtacaaataacacaactc 26028970  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 33425170 - 33425104
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaa 123  Q
    |||||||||||||| |||||||   |||||||| |||||| ||||||||  ||||||||||||||||    
T  33425170 gcgtgcttctcacaatatcaaagattgttgcataagttgtccaattttgaatgtacatataacacaa 33425104  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 40611647 - 40611716
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
    ||||||| |||||||| ||||| | |||||||| |||||| ||| | | |||||||| ||||||||||||    
T  40611647 gcgtgctcctcacattgtcaaaggttgttgcataagttgtacaaatatcgttgtacaaataacacaactc 40611716  T

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Target: scaffold0063 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 35830 - 35769
Alignment:
Q  57 gcgtgcttctcacattatcaaatgatgttgcattagttgttcaattttggttgtacatataa 118  Q
    ||||||| |||||| | |||||  ||||| |||||||||||||| |||||||||||||||||    
T  35830 gcgtgctcctcacaatgtcaaaaaatgttacattagttgttcaaatttggttgtacatataa 35769  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 5087 - 5043
Alignment:
Q  82 tgttgcattagttgttcaattttggttgtacatataacacaactc 126  Q
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T  5087 tgttgcataaattgtccaattttagttgtacatataacacaactc 5043  T

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