View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9121_low_2 (Length: 529)
Name: NF9121_low_2
Description: NF9121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9121_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 24066085 - 24066596
Alignment:
| Q |
1 |
gagtgcgagagcaaattttgctgaagttgaaggaatgtttccactggcattgtaagtggtcatgacatcatgcagaccttgaagtaaattctgaacttga |
100 |
Q |
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| T |
24066085 |
gagtgcgagagcaaattttgcagaagttgaaggaaggtttccactggcattgtaagtagtcatgacatcatgcagaccttgaagtaaattctgaacttga |
24066184 |
T |
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| Q |
101 |
tttttctcttgtgctaacataaacttttcttgatccatcataatcttatgctctttcaagctaatatacgcatccaacatctcatccaatgttatcaaac |
200 |
Q |
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| T |
24066185 |
tttttctcttgtgctaacataaacttttcttgatccatcataatcttatgctctttcaagctaatatacgcatccaacatctcatccaatgttatcaaac |
24066284 |
T |
|
| Q |
201 |
tcttttgctcctgattaagaaatagaaagnnnnnnnnnncaaaatccattaataaagaaaaactagacttaatgcgcataaatcctgaacaaaacaaagt |
300 |
Q |
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| T |
24066285 |
tcttttgctcctgattaagaaatagaaagaaaaaaaaaacaaaatccattaataatgaaaaactagacttaatgtgcataaatcctgaacaaaacaaagt |
24066384 |
T |
|
| Q |
301 |
taacacaaaaggggtgcaaatagatgataagtaaagatgcagaaaaataccttaggaatgagagaagaagcttcgtctctgaaagtggaacaagttgatg |
400 |
Q |
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| T |
24066385 |
taacacaaaaggggtgcaaatagatgataagtaaagatgcagaaaaataccttaggaatgagagaagaagcttcgtctctgaaagtggaacgagttgatg |
24066484 |
T |
|
| Q |
401 |
aaaaattgttgtccaacaggtatttgtaaacgacgaatgcaacctgttgagggatgtttttatcctccattgtagtgaaggttaaacgatttaagcatgc |
500 |
Q |
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| T |
24066485 |
aaaaattgttgtccaacaggtatttgtcaacgatgaatgcaacctgttgagggatgtttttatcgtccattgtagtgaaggttaaacgatttaagcatgc |
24066584 |
T |
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| Q |
501 |
tgtaaataatta |
512 |
Q |
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| T |
24066585 |
tgtaaataatta |
24066596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 24066929 - 24067033
Alignment:
| Q |
100 |
atttttctcttgtgctaacataaacttttcttgatccatcataatcttatgctctttcaagctaatatacgcatccaacatctcatccaatgttatcaaa |
199 |
Q |
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||||||||||||| ||| |||||| ||||||||||||| | | |||||| | ||||| ||| |||||| ||| || |||||||||||||| |||||| |
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| T |
24066929 |
atttttctcttgttctatgataaacatttcttgatccattgtcaccttatgatttttcaggctgatatactcatataatatctcatccaatgtcatcaaa |
24067028 |
T |
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| Q |
200 |
ctctt |
204 |
Q |
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|||| |
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| T |
24067029 |
ttctt |
24067033 |
T |
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