View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9121_low_25 (Length: 222)
Name: NF9121_low_25
Description: NF9121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9121_low_25 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34654 - 34875
Alignment:
| Q |
1 |
ttaggtggattataactcaacgcatttgaaaatgtaagcctcacatcagcagcaaattccaatgggcctgtgtatgatcctttagcaatcttgttttgta |
100 |
Q |
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| T |
34654 |
ttaggtggattataactcaacgcatttgaaaatgtaagcctcacatcagcagcaaattccaatgggcctgtgtatgatcctttagcaatcttgttttgta |
34753 |
T |
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| Q |
101 |
ctgttcccaaatccataggatgcgttatgacactgaaatagtcgggaatattcaacttaaccacatccacaggggcattaaaaacccaaccaaatttgtg |
200 |
Q |
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| T |
34754 |
ctgttcccaaatccataggatgcgttatcacactgaaatagtcaggaatattcaacttaaccacatccacaggggcattaaaaacccaaccaaatttgtg |
34853 |
T |
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| Q |
201 |
cttcatcaacagtttcaatagt |
222 |
Q |
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| T |
34854 |
cttcatcaacagtttcaatagt |
34875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 46984 - 47172
Alignment:
| Q |
4 |
ggtggattataactcaacgcatttgaaaatgtaagcctcacatcagcagcaaattccaatgggcctgtgtatgatcctttagcaatcttgttttgtactg |
103 |
Q |
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| T |
46984 |
ggtggattataggtcattgcattcgaaaacgtaagcctcacgtcaccagcaaattccaatgggtcagagtacgctctggcatcgatcttgctttttattg |
47083 |
T |
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| Q |
104 |
ttcccaaatccataggatgcgttatgacactgaaatagtcgggaatattcaacttaaccacatccacaggggcattaaaaacccaacca |
192 |
Q |
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| T |
47084 |
ttcccaaatccataggttccttaatgatagtgaaataatcaggaaggttcaacttgactacatccacaggggtgttgaaaacccaacca |
47172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 34066494 - 34066404
Alignment:
| Q |
106 |
cccaaatccataggatgcgttatgacactgaaatagtcgggaatattcaacttaaccacatccacaggggcattaaaaacccaaccaaatt |
196 |
Q |
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| T |
34066494 |
cccaaatccattggatgtttgatgacattgaaataatccggaatgttcaatttaacaacatcgactggttcattaaaaacccaaccaaatt |
34066404 |
T |
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