View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9121_low_3 (Length: 419)
Name: NF9121_low_3
Description: NF9121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9121_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 24355172 - 24355552
Alignment:
| Q |
18 |
tgaagtgcactgcagaaggaatagatggaggaatgtttgtgggaaggaaaagtagagaaaatggtattgttgttagtattgctgagaggtataaggttgt |
117 |
Q |
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| T |
24355172 |
tgaagtgcactgcagaaggaatagatggaggaatgtttgtgggaaggaaaagtagagaaaatggcattgttgttagtattcctgagaggtataaggttgt |
24355271 |
T |
|
| Q |
118 |
gttgttgttggcatgtgttatgtgtctttgtaatgctgatcgcgttgtcatgtcggttgctgttgttcctcttgctgctaaacatggttggtctagttct |
217 |
Q |
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||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24355272 |
gttattgttggcatgtgttatgtgtctttgtaacgctgaccgtgttgtcatgtcggttgctgttgttcctcttgctgctaaacatggttggtctagttct |
24355371 |
T |
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| Q |
218 |
ttccttggcattgttcaggtaccaataatattgattccaaatcttctgatcatgaatatacgtgttccgtgtccaacacatctagttatattcgatcgtg |
317 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24355372 |
tttcttggcattgttcaggtaccaataatattgattccaaatcttctgatcatgaatatacgtgttccgtgtccaaaacatctagttatattcgatcgtg |
24355471 |
T |
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| Q |
318 |
tgttttgtctgtgtcagtgcttcgtataaattgacgagaacaattcataagtctagtcaatgacttgggaagaagctagta |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24355472 |
tgttttgtctgtgtcagtgcttcgtataaattgacgagaacaattcataagtctagtcaatggcttgggaagaagctagta |
24355552 |
T |
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