View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_high_9 (Length: 377)
Name: NF9122_high_9
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 36085750 - 36086096
Alignment:
| Q |
20 |
aatctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085750 |
aatctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagat |
36085849 |
T |
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| Q |
120 |
tcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataataagaaacacaaagt |
219 |
Q |
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| T |
36085850 |
tcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataataagaaacacaaagt |
36085949 |
T |
|
| Q |
220 |
tcaaaccaatgatcataataaaaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaatccactcaccaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085950 |
tcaaaccaatgatcataataaaaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaatccactcaccaca |
36086049 |
T |
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| Q |
320 |
agagatctcattgaaacagaatgttccttagaagtaagaataatcta |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36086050 |
agagatctcattgaaacagaatgttccttagaagtaagaagaatcta |
36086096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 40730258 - 40730108
Alignment:
| Q |
20 |
aatctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagat |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40730258 |
aatctgacctcgttcatatcgtgtgccatgtttttcaaagtatccaatccttctgcaatcacatccaaaccttcatcctaaaagattcatataattagat |
40730159 |
T |
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| Q |
120 |
tcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagata |
170 |
Q |
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| T |
40730158 |
ttgaaatgatgtccaagttaacattctacatataacatcatgcaaaagata |
40730108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 28511073 - 28511149
Alignment:
| Q |
23 |
ctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatccta |
99 |
Q |
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|||||||||||||| || || ||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
28511073 |
ctgacctcattcatgtcatgcgccatgtctttcaaagtatccaatccttctgcaatcatatccaaaccttgatccta |
28511149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 48393077 - 48393017
Alignment:
| Q |
305 |
aatccactcaccacaagagatctcattgaaacagaatgttccttagaagtaagaataatct |
365 |
Q |
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|||| ||||||| |||| |||||||| ||||| |||| |||||||||||||||| ||||| |
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| T |
48393077 |
aatcaactcaccccaagcgatctcatggaaacggaatcctccttagaagtaagaagaatct |
48393017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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