View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_10 (Length: 489)
Name: NF9122_low_10
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 101 - 478
Target Start/End: Complemental strand, 17783300 - 17782923
Alignment:
| Q |
101 |
tagcaaatagtaaattagataaaaatccagttactttatttagcagcataaggagaataaagtattcatattcagtgcttctaaattcatgttccaataa |
200 |
Q |
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| T |
17783300 |
tagcaaatagtaaattacataaaaatccagttactttatttagcagcataaggagaataaagtattaatattcagtgcttctaaattcatgttccaataa |
17783201 |
T |
|
| Q |
201 |
tgcttttcagtttggcaaccaacttctcatgaggaggaagtgtctccttcaccaggggatgttccttcaagttattcacccacatgaaaaatttcggcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17783200 |
tgcttttcagtttggcaaccaacttctcatgaggaggaagtgtctccttcaccaggggatgttccttcaagttattcacccaaatgaaaaatttcggcat |
17783101 |
T |
|
| Q |
301 |
cttttcgggtgtgaagacctctatctcacaggactcctgaaatgcttcgtaggtgcaagaagtcgcagctaccacaatgtcgaggagtcctagtgtttcg |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17783100 |
cttttcgggtgtgaagacctctatctcacaggcctcctgaaatgcttcgtaggtgcaagaagtcgcagctaccacaatgtcgaggagtcctagtgtttcg |
17783001 |
T |
|
| Q |
401 |
ccattgaagaagtggaattgctcattaaaaccttccttgaccccttcttcaaacaccacaagtatctcttccatctct |
478 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17783000 |
ccgttgaagaagtggaatttctcattaaaaccttccttgaccccttcttcaaacaccacaagtatctcttccatctct |
17782923 |
T |
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