View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_11 (Length: 439)
Name: NF9122_low_11
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 39 - 415
Target Start/End: Complemental strand, 2432602 - 2432226
Alignment:
| Q |
39 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432602 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
2432503 |
T |
|
| Q |
139 |
aaatgtcaatgccttctggaaagtacctaatttacatacattgatatcaatatcaactactcattagtgtgtctcatgtttctaagcgtagtaagtagta |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432502 |
aaatgtcaatgccttctggaaagtacctaatttacatacattgatatcaatatcaactactcattagtgtgtctcatgtttctaagcgtagtaagtagta |
2432403 |
T |
|
| Q |
239 |
actatgaagcaccgacacagattgatactaacactgatgcatagacatggcaataatttggaaaaatagaagtgagtagtgactgtatgtatttgtaagt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432402 |
actatgaagcaccgacacagattgatactaacactgatgcatagacatggcaataatttggaaaaatagaagtgagtagtgactgtatgtatttgtaagt |
2432303 |
T |
|
| Q |
339 |
gactgtgttgtgctggtgtaggacacaccttcaatataacttgtcgatataacatgtcgatgctacagcatgtgtag |
415 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2432302 |
gactgtgttgtgctggtgtaggacacaccttcaatataatgtgtcgatataacatgtcgatgctacagcatgtgtag |
2432226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 2516392 - 2516539
Alignment:
| Q |
39 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
138 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2516392 |
agattatactgtgagatcattccacacacaggtatgcggccatggagtttcatattcaagagtacagcatcaagtgtctttcccccaacattctcaaagt |
2516491 |
T |
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| Q |
139 |
aaatgtcaatgccttctggaaagtacctaatttacatacattgatatc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2516492 |
aaatgtcaatgccttctggaaagtacctaatttacataaattgatatc |
2516539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 2429620 - 2429473
Alignment:
| Q |
39 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
138 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
2429620 |
agattgtactgtgagatcattccacacacaggtatccgcccatggagtttcatattcaagagtacagcatcaagtgtctttccccccacattctcaaagt |
2429521 |
T |
|
| Q |
139 |
aaatgtcaatgccttctggaaagtacctaatttacatacattgatatc |
186 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| ||||||||| |
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| T |
2429520 |
aaatgtcaatgccttctggaaagtatctagtttacataaattgatatc |
2429473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 2435963 - 2435816
Alignment:
| Q |
39 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
138 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||| || || |||||||||||||||| |
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| T |
2435963 |
agattgtactgtgagatcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagt |
2435864 |
T |
|
| Q |
139 |
aaatgtcaatgccttctggaaagtacctaatttacatacattgatatc |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
2435863 |
aaatgtcaatgccttctggaaagtacctaatatacataaattgatatc |
2435816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 2496819 - 2496951
Alignment:
| Q |
39 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
138 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||||||| |||| | |||| |||||||||||||| ||||||||||| || |||||||||||||||| |
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|
| T |
2496819 |
agattgtactgtgagatcattccacatgcaggtatgcggccgtggactctcatgttcaagagtacagcatcaagtgtcttgcctccaacattctcaaagt |
2496918 |
T |
|
| Q |
139 |
aaatgtcaatgccttctggaaagtacctaattt |
171 |
Q |
| |
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|||| ||||||||||| || |||| ||| |||| |
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| T |
2496919 |
aaatatcaatgccttcagggaagtgcctgattt |
2496951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 2512121 - 2512253
Alignment:
| Q |
39 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
138 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||||||||| || ||||| |||||||||| |
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| T |
2512121 |
agattgtactgtgagatcattccacacacaggtatgcgaccatgtagtttcatgttcaagagtacggcatcaagtgtcttgcctccaacgttctcaaagt |
2512220 |
T |
|
| Q |
139 |
aaatgtcaatgccttctggaaagtacctaattt |
171 |
Q |
| |
|
||| |||||| ||||||||||||| ||| |||| |
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|
| T |
2512221 |
aaacgtcaattccttctggaaagtgcctgattt |
2512253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 2505500 - 2505637
Alignment:
| Q |
39 |
agattatactgtgagatcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagt |
138 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| || || | | |||| ||||||||||| || ||||||||||| || || || |||||||||| |
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| T |
2505500 |
agattgtactgtgagatcattccacacacaggtatgcgaccttgtaatctcatgttcaagagtacggcatcaagtgtcttgccaccgacgttctcaaagt |
2505599 |
T |
|
| Q |
139 |
aaatgtcaatgccttctggaaagtacctaatttacata |
176 |
Q |
| |
|
||| ||||||||||||||||||| ||| ||| ||||| |
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|
| T |
2505600 |
aaacatcaatgccttctggaaagtgcctgattcacata |
2505637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 41540509 - 41540465
Alignment:
| Q |
123 |
ccaacattctcaaagtaaatgtcaatgccttctggaaagtaccta |
167 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| |||||||||||| |
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|
| T |
41540509 |
ccaacattgtcaaagtatatgtcaattccttcgggaaagtaccta |
41540465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 1083134 - 1083170
Alignment:
| Q |
117 |
tttcccccaacattctcaaagtaaatgtcaatgcctt |
153 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| |
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|
| T |
1083134 |
tttcccccaacattgtcaaagttaatgtcaatgcctt |
1083170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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