View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9122_low_13 (Length: 429)

Name: NF9122_low_13
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9122_low_13
NF9122_low_13
[»] chr1 (6 HSPs)
chr1 (194-415)||(8137611-8137832)
chr1 (194-389)||(7670952-7671147)
chr1 (18-134)||(8137894-8138010)
chr1 (194-313)||(7709174-7709293)
chr1 (194-265)||(7709323-7709394)
chr1 (18-59)||(16035638-16035679)
[»] chr3 (1 HSPs)
chr3 (18-59)||(12112665-12112706)
[»] scaffold2020 (1 HSPs)
scaffold2020 (18-59)||(401-442)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-59)||(165053-165094)
[»] chr7 (1 HSPs)
chr7 (18-59)||(8076080-8076121)
[»] chr4 (2 HSPs)
chr4 (18-59)||(55251749-55251790)
chr4 (18-58)||(19541185-19541225)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 194 - 415
Target Start/End: Complemental strand, 8137832 - 8137611
Alignment:
Q  194 tatgatgatcatcttggcatttaccactttcattacacttatctctggatcctcaagtgaatcatttccatgtcctgttgatgacaatctttcacctgaa 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8137832 tatgatgatcatcttggcatttaccactttcattacacttatctctggatcctcaagtgaatcatttccatgtcttgttgatgacaatctttcacctgaa 8137733  T
Q  294 tttctctcctccaagacaatatacttcaacatgagtctcgatcaaattctagaatctgtggattggagagaaagaggagttgtcacctctgttaaagacc 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||    
T  8137732 tttctctcctccaagacaatatacttcaacatgagtctcgatcaaattccaaaatctgtggattggagagaaagaggagttgtcacctctattaaagacc 8137633  T
Q  394 aaacctcttggtgtggtgagtg 415  Q
    ||||||||||||||||||||||    
T  8137632 aaacctcttggtgtggtgagtg 8137611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 194 - 389
Target Start/End: Original strand, 7670952 - 7671147
Alignment:
Q  194 tatgatgatcatcttggcatttaccactttcattacacttatctctggatcctcaagtgaatcatttccatgtcctgttgatgacaatctttcacctgaa 293  Q
    |||||| ||||| ||||||| |||||||||||||||||| || ||||| ||||||||||||||| |||||||| || |  ||||| || ||||| |||||    
T  7670952 tatgatcatcattttggcatataccactttcattacactcatttctggttcctcaagtgaatcacttccatgtgctttaaatgacgatgtttcagctgaa 7671051  T
Q  294 tttctctcctccaagacaatatacttcaacatgagtctcgatcaaattctagaatctgtggattggagagaaagaggagttgtcacctctgttaaa 389  Q
    |||||| |||| |||||  |||||||||||| |||||| |||||||||| | ||| |||||||||||||  |||||||| ||||||||||||||||    
T  7671052 tttctcgcctcaaagacggtatacttcaacacgagtcttgatcaaattccaaaatttgtggattggagaacaagaggagctgtcacctctgttaaa 7671147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 8138010 - 8137894
Alignment:
Q  18 ttgatagtctgtcttgcacaactttagacaatgccacgaaacctaacctagtcgtgactctagtaacaacttcgtgagatattctctagaatttgggaat 117  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||    
T  8138010 ttgatagtctgccttgcacaactttaggcaatgccacgaaacttaacctagtcgcgactctagtaacaacttcggtagatattctttagaatttgggaat 8137911  T
Q  118 tcaaatacaataatttg 134  Q
    |||||||||||||||||    
T  8137910 tcaaatacaataatttg 8137894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 7709174 - 7709293
Alignment:
Q  194 tatgatgatcatcttggcatttaccactttcattacacttatctctggatcctcaagtgaatcatttccatgtcctgttgatgacaatctttcacctgaa 293  Q
    |||||| ||||| ||||||| |||||||||||||||||| || ||||| ||||||||||||||| |||||||| || |  ||||| || ||||| |||||    
T  7709174 tatgatcatcattttggcatataccactttcattacactcatttctggttcctcaagtgaatcacttccatgtgctttaaatgacgatgtttcagctgaa 7709273  T
Q  294 tttctctcctccaagacaat 313  Q
    |||||| |||| ||||||||    
T  7709274 tttctcgcctcaaagacaat 7709293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 7709394 - 7709323
Alignment:
Q  194 tatgatgatcatcttggcatttaccactttcattacacttatctctggatcctcaagtgaatcatttccatg 265  Q
    |||||| ||||| ||||||| |||||||||||||||||| || ||||| ||||||||||||||| |||||||    
T  7709394 tatgatcatcattttggcatataccactttcattacactcatttctggttcctcaagtgaatcacttccatg 7709323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 16035679 - 16035638
Alignment:
Q  18 ttgatagtctgtcttgcacaactttagacaatgccacgaaac 59  Q
    |||||| |||||||||||||||||| |||| |||||||||||    
T  16035679 ttgataatctgtcttgcacaactttggacagtgccacgaaac 16035638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 12112665 - 12112706
Alignment:
Q  18 ttgatagtctgtcttgcacaactttagacaatgccacgaaac 59  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  12112665 ttgatagtctgtcttgcacaactttggacagtgccacgaaac 12112706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 442 - 401
Alignment:
Q  18 ttgatagtctgtcttgcacaactttagacaatgccacgaaac 59  Q
    |||||||| |||||||||||||||| |||||||||| |||||    
T  442 ttgatagtgtgtcttgcacaactttggacaatgccatgaaac 401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 165053 - 165094
Alignment:
Q  18 ttgatagtctgtcttgcacaactttagacaatgccacgaaac 59  Q
    |||||||| |||||||||||||||| |||||||||| |||||    
T  165053 ttgatagtgtgtcttgcacaactttggacaatgccatgaaac 165094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 8076121 - 8076080
Alignment:
Q  18 ttgatagtctgtcttgcacaactttagacaatgccacgaaac 59  Q
    ||||||||||||||||||||| ||||| || |||||||||||    
T  8076121 ttgatagtctgtcttgcacaattttaggcagtgccacgaaac 8076080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 55251790 - 55251749
Alignment:
Q  18 ttgatagtctgtcttgcacaactttagacaatgccacgaaac 59  Q
    ||||||||||||||||||||| ||| |||| |||||||||||    
T  55251790 ttgatagtctgtcttgcacaattttggacagtgccacgaaac 55251749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 19541185 - 19541225
Alignment:
Q  18 ttgatagtctgtcttgcacaactttagacaatgccacgaaa 58  Q
    |||||||||||||||| |||| |||| ||||||||||||||    
T  19541185 ttgatagtctgtcttgtacaattttaaacaatgccacgaaa 19541225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University