View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_15 (Length: 428)
Name: NF9122_low_15
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 134857 - 134464
Alignment:
| Q |
19 |
cttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgcacttatagatg |
118 |
Q |
| |
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||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
134857 |
cttctggcattcatacacaccaattaaccacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgcactcatagatg |
134758 |
T |
|
| Q |
119 |
attatcatttgtaaacactcaaatccttgacaatggtttttccaaatgtgcttcagttttggaagagacttcaatattaagaacaatagctcccactgca |
218 |
Q |
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||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
134757 |
attatcaattgtaaacaatcgaatccttgacaatggtttttccaaatgtgcttcagttttggaagagaaagcaattttaagaacactagctcccactgca |
134658 |
T |
|
| Q |
219 |
acatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatcatgttggatgggat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
134657 |
acatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgataataagtgcatcatgttggatgggat |
134558 |
T |
|
| Q |
319 |
gcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaacgtctct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
134557 |
gcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaacgtctct |
134464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 157375 - 157035
Alignment:
| Q |
19 |
cttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgcacttatagatg |
118 |
Q |
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||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||| |
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| T |
157375 |
cttctggcattcatacacaccgataaaccacaaatttggaatgcttgtgagcacggaaacatccagaagaacatattccaaatcattgcagtccttgatg |
157276 |
T |
|
| Q |
119 |
attatcatttgtaaacactcaaatccttgacaat----ggtttttccaaatgtgcttcagttttggaagagacttcaatattaagaacaatagctcccac |
214 |
Q |
| |
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|||| || || ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
157275 |
attaacaattctaaacactcgaatccttgacaattaatgatttttccaaatgtgcttcagttttggaagagaaaacaattttaagaacaatagctcccac |
157176 |
T |
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| Q |
215 |
tgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatcatgttggatg |
314 |
Q |
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|||||||||| ||| ||||||| |||||||||||||||| ||||||||||| | ||| | |||| || |||||||||||||||||||||||||||||||| |
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| T |
157175 |
tgcaacatgcgatcggttgatttaaatatctcttctaagcactcacattcaatcacaaatagttccttcaaatgtgagaataagtgcatcatgttggatg |
157076 |
T |
|
| Q |
315 |
ggatgcaattcaatagcttgtgacagtttacaatgtcaagg |
355 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |
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| T |
157075 |
ggatgcaattcaatagcttgtgaaagtttacaatgtcaagg |
157035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 34377367 - 34376968
Alignment:
| Q |
19 |
cttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgcacttatagatg |
118 |
Q |
| |
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||||| ||||||| |||||| ||| ||| |||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||| |
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| T |
34377367 |
cttctcgcattcagacacatgaatcgacatcaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatcattgcacttcttgatc |
34377268 |
T |
|
| Q |
119 |
attatcatttgtaaacactcaaatcct------tgacaatggtttttccaaatgtgcttcagttttggaagagacttcaatattaagaacaatagctccc |
212 |
Q |
| |
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||||| ||||||| || | || | | |||| ||| |||||||| ||||||||||||||||||||| | | ||| |||||| | ||| || | |
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| T |
34377267 |
cttatctcttgtaaatacccgaaccttaaagtttgaccatgatttttccagatgtgcttcagttttggaagacaatacaaatttaagacctctagttcac |
34377168 |
T |
|
| Q |
213 |
actgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatcatgttgga |
312 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| ||||| |||||||||| || || | || || || |||||||||||| |||||||||||||| |
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|
| T |
34377167 |
actgcaagatgctatcatttgattcaaatatctctactaagcactcacattctttcactgttagagacttcacatgtgagaataattgcatcatgttgga |
34377068 |
T |
|
| Q |
313 |
tgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaacgtctct |
412 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
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| T |
34377067 |
tgggatgcaattcaatagcttatgacagtttacaatctcaagcactattactcttttgatgtagccaagaagctcttcatccatatctctaaatgtctct |
34376968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 34550013 - 34550418
Alignment:
| Q |
19 |
cttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgcacttatagatg |
118 |
Q |
| |
|
||||| ||||||| ||||| ||| ||| |||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||| |
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| T |
34550013 |
cttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatcattgcacttcttgatc |
34550112 |
T |
|
| Q |
119 |
attatcatttgtaaacactcaaatcct------tgacaatggtttttccaaatgtgcttcagttttggaagagacttcaat---att---aagaacaata |
206 |
Q |
| |
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||||| || ||||||| | || | | |||| ||| |||||||| ||||||||||||||||||||||| |||| ||| |||| | || |
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| T |
34550113 |
cttatctcttctaaacacccgaaccttaaagtttgaccatgatttttccatatgtgcttcagttttggaagagaaaacaattctatttctaagacctcta |
34550212 |
T |
|
| Q |
207 |
gctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatcat |
306 |
Q |
| |
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| || |||||||| ||||||||| ||||||||||||||||| ||||| |||||||||| || || | || || || |||||||||||| |||||||| |
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| T |
34550213 |
gttcacactgcaagatgctatcatttgattcaaatatctctactaagcactcacattctttcactgttagagacttcacatgtgagaataattgcatcat |
34550312 |
T |
|
| Q |
307 |
gttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaac |
406 |
Q |
| |
|
||||||||| ||||||||||||||||||| | | |||||||||||||| | ||||||||||||||||||||||| ||||||||| || |||||| |||| |
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|
| T |
34550313 |
gttggatggaatgcaattcaatagcttgttaaactttacaatgtcaagatttgttactcttttgatgtagccaacaagctcttcatctatatctctaaat |
34550412 |
T |
|
| Q |
407 |
gtctct |
412 |
Q |
| |
|
|||||| |
|
|
| T |
34550413 |
gtctct |
34550418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 412
Target Start/End: Original strand, 15891058 - 15891246
Alignment:
| Q |
224 |
ctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatcatgttggatgggatgcaat |
323 |
Q |
| |
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|||||| ||||||||||||||||||||||| | ||||||| ||| ||| ||| || ||||||||||||||||||| |||| | |||||||||| |
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| T |
15891058 |
ctatcatttgattcaaatatctcttctaagcccccacattctcgcacattgagaatctgcatatgtgagaataagtgcatcttgttcgctgggatgcaac |
15891157 |
T |
|
| Q |
324 |
tcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaacgtctct |
412 |
Q |
| |
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|||| ||||||||||| ||| |||||| | | |||||||||| |||||||| ||| ||||||||| | |||||| |||| |||||| |
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|
| T |
15891158 |
tcaacagcttgtgacactttttaatgtcgatctttgttactcttctgatgtaggcaacaagctcttcattgatatctctaaatgtctct |
15891246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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