View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_17 (Length: 415)
Name: NF9122_low_17
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_17 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Complemental strand, 44694221 - 44693819
Alignment:
| Q |
13 |
tttcgtgttaaactgagaagttactggatgaggagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattag |
112 |
Q |
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| T |
44694221 |
tttcgtgttaaactgagaagttgctggatgaggagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattag |
44694122 |
T |
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| Q |
113 |
atatctatttatcacttctactttctgaagtttaaaatcattcaagcttattcgtatacaaaattagtctctgaaaatagctctagacttgtttatttcc |
212 |
Q |
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| T |
44694121 |
atatctatttatcacttctactttctgaagtttaaaatcattcaagcttattcgtatacaaaattagtctctgaaaatagctctagacttgtttacttcc |
44694022 |
T |
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| Q |
213 |
attttcgaggatgtttaggattattcctaaaggggagagaagatttctacaattaaaaagaaccctgaaatgcaagcaaaccttcagattctgagggaca |
312 |
Q |
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| T |
44694021 |
attttcgacaatgtttaggattattcctaaaggggagagaagatttctacaattaaaaagaaccctgaaatgcaagcaaaccttcagattctgagggaca |
44693922 |
T |
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| Q |
313 |
aaattgtgtactctcctctcgatatttttatttatttagcaagcatttttcttttgtgcaaaaacgtgaggtacaaaaccatataacatactgaagcagg |
412 |
Q |
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| T |
44693921 |
aaattgtgtactctcctctcgatatttttatttgcttagcaagcatttttcttttgtgcaaaaatgtgaggtacaaaaccatataacatactgaagcagg |
44693822 |
T |
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| Q |
413 |
gtt |
415 |
Q |
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| T |
44693821 |
gtt |
44693819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 44664569 - 44664498
Alignment:
| Q |
45 |
gagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatat |
116 |
Q |
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| T |
44664569 |
gagacttttaaacaatgacacaaattggatataacttcttcaatatccaacaacattactagtattagatat |
44664498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 44684475 - 44684404
Alignment:
| Q |
45 |
gagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatat |
116 |
Q |
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| T |
44684475 |
gagacttttaaacaatgacacaaattggatataacttcttcaatatccaacaacattactagtattagatat |
44684404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 44633933 - 44633877
Alignment:
| Q |
262 |
caattaaaaagaaccctgaaatgcaagcaaaccttcagattctgagggacaaaattgt |
319 |
Q |
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| T |
44633933 |
caattaaaaagaacactggaatgcaagcaaaccttcatattc-gagggacaaaattgt |
44633877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 44693637 - 44693604
Alignment:
| Q |
266 |
taaaaagaaccctgaaatgcaagcaaaccttcag |
299 |
Q |
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| T |
44693637 |
taaaaagaaccctgaaatgcaagcaaaccttcag |
44693604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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