View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9122_low_2 (Length: 658)

Name: NF9122_low_2
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9122_low_2
NF9122_low_2
[»] chr5 (9 HSPs)
chr5 (12-639)||(34840048-34840675)
chr5 (76-173)||(34336132-34336232)
chr5 (396-443)||(21157810-21157857)
chr5 (396-443)||(21150669-21150716)
chr5 (396-443)||(11413525-11413572)
chr5 (396-443)||(18392966-18393013)
chr5 (399-443)||(4609204-4609249)
chr5 (396-443)||(18676409-18676457)
chr5 (12-51)||(34334937-34334977)
[»] chr2 (6 HSPs)
chr2 (396-448)||(45065267-45065319)
chr2 (396-463)||(37077365-37077432)
chr2 (396-443)||(38148037-38148084)
chr2 (396-448)||(37660932-37660984)
chr2 (396-443)||(28967232-28967279)
chr2 (402-443)||(30545484-30545526)
[»] chr4 (10 HSPs)
chr4 (396-443)||(1180900-1180947)
chr4 (396-443)||(1615054-1615101)
chr4 (398-443)||(37551665-37551710)
chr4 (396-443)||(9746426-9746473)
chr4 (396-448)||(3802358-3802410)
chr4 (404-443)||(1146045-1146084)
chr4 (396-443)||(41813843-41813890)
chr4 (401-443)||(20294581-20294623)
chr4 (396-448)||(53855564-53855616)
chr4 (410-443)||(43086615-43086648)
[»] chr3 (4 HSPs)
chr3 (396-443)||(2642897-2642944)
chr3 (397-443)||(53055685-53055731)
chr3 (399-443)||(23771485-23771529)
chr3 (406-443)||(29748734-29748771)
[»] chr7 (7 HSPs)
chr7 (398-458)||(48981365-48981425)
chr7 (396-443)||(8965901-8965948)
chr7 (396-443)||(35684341-35684388)
chr7 (396-443)||(46563124-46563171)
chr7 (398-443)||(3178127-3178172)
chr7 (396-443)||(26803430-26803478)
chr7 (401-443)||(38168789-38168831)
[»] scaffold0006 (1 HSPs)
scaffold0006 (396-443)||(96060-96107)
[»] scaffold0003 (1 HSPs)
scaffold0003 (396-443)||(252789-252836)
[»] chr8 (5 HSPs)
chr8 (396-443)||(8954697-8954744)
chr8 (396-443)||(11163461-11163508)
chr8 (404-443)||(9301541-9301580)
chr8 (396-447)||(38074471-38074521)
chr8 (396-459)||(11727777-11727840)
[»] chr6 (1 HSPs)
chr6 (396-443)||(19812151-19812198)
[»] scaffold0036 (1 HSPs)
scaffold0036 (396-443)||(23331-23379)
[»] chr1 (2 HSPs)
chr1 (396-448)||(11248976-11249028)
chr1 (396-443)||(50152628-50152675)
[»] scaffold0236 (1 HSPs)
scaffold0236 (396-443)||(14249-14296)


Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 12 - 639
Target Start/End: Complemental strand, 34840675 - 34840048
Alignment:
Q  12 attatactagaaacaaatctttgttaaacaaattaagcaattaaacctaaatctttgttaaaggcactcttttttgaagaaaaaacaagaggattggtaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34840675 attatactagaaacaaatctttgttaaacaaattaagcaattaaacctaaatctttgttaaaggcactcttttttgaagaaaaaacaagaggattggtaa 34840576  T
Q  112 cggacaaaaaagctttatctgtacagtagtagtaacttaaatggtttccacatcataatcatacaaagtagcaatttcttgttgtattcctagttggttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  34840575 cggacaaaaaagctttatctgtacagtagtagtaacttaaatggtttccacatcataatcatacaaagtaacaatttcttgttgtattcctagttgattt 34840476  T
Q  212 tcttttgcacgtcttgtaagatgtttgtgttgtgacaatttgattatattaaacactttgaccaaattcacaaacctgtggtaatcaacttctttcttcg 311  Q
    |||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34840475 tcttttgcacgttttgtgagatgtttgtgttgtgacaatttgatgatattaaacactttgaccaaattcacaaacccgtggtaatcaacttctttcttcg 34840376  T
Q  312 ctatatctggtattggaggtgatgtgctctatctatgaataaaaagacaattggcaaatttgatgaacagaagaaatcaagaaaatttgttgtcttggtt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34840375 ctatatctggtattggaggtgatgtgctctatctatgaataaaaagacaattggcaaatttgatgaacagaagaaatcaagaaaatttgttgtcttgatt 34840276  T
Q  412 tgtgtaaaaaacttaaaagtgacaattaaaaaagaatataggaagtactaaaataagaattggaatcacttttttcggtgactaagtaattgattcctta 511  Q
    |||||||||||||||||||||||||||||||||||| | || || ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  34840275 tgtgtaaaaaacttaaaagtgacaattaaaaaagaacagagaaaatactaaaataagaatcggaatcgcttttttcgatgactaagtaattgattcctta 34840176  T
Q  512 aaatgtgattagtgtatcagtagtagaaatagattatggtgggcacaacatttaaataggacaaaggtccaatctcaaaaccaattaagtagcacaaacc 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34840175 aaatgtgattagtgtatcagtagtagaaatagattatggtgggcacaacatttaaataggacaaaagtccaatctcaaaaccaattaagtagcacaaacc 34840076  T
Q  612 aaacatatatgaactacactcttccttg 639  Q
    ||||||||||||||||||||||||||||    
T  34840075 aaacatatatgaactacactcttccttg 34840048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 34336132 - 34336232
Alignment:
Q  76 cactcttttttgaagaaaaaacaagaggattggtaacggacaaaaaagctttatctgt--acagtagtagtaacttaaa-tggtttccacatcataatca 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||| ||||||||||||||| ||||    
T  34336132 cactcttttttgaagaaaaaacaagaggattggtaacggacaaaaaagctttatctgtacacagtagaagtaaattaaagtggtttccacatcatcatca 34336231  T
Q  173 t 173  Q
    |    
T  34336232 t 34336232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 21157810 - 21157857
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21157810 atttgttgtcttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 21157857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 21150669 - 21150716
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  21150669 atttgttgtcttggtttgtgtaaaaaactcaaaagtgacagttaaaaa 21150716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 11413572 - 11413525
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  11413572 atttgttgtcttggtttgtgtaaaaaactcaaaaatgataattaaaaa 11413525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 18393013 - 18392966
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||    
T  18393013 atttgttgtcttggtttatgtaaaaatctcaaaagtgacaattaaaaa 18392966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 4609204 - 4609249
Alignment:
Q  399 tgttgtcttggtttgtgt-aaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  4609204 tgttgtcttggtttgtgtaaaaaaactcaaaagtgacaattaaaaa 4609249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 18676457 - 18676409
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaactt-aaaagtgacaattaaaaa 443  Q
    ||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  18676457 atttgttgtcttgatttgtgtaaaaaaattcaaaagtgacaattaaaaa 18676409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 34334937 - 34334977
Alignment:
Q  12 attatactagaaacaaatctttgtt-aaacaaattaagcaa 51  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  34334937 attatactagaaacaaatctttgttgaaacaaattaagcaa 34334977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 45065267 - 45065319
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaat 448  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  45065267 atttgttgtcttggtttgtgtaaaaaattcaaaagtgacaattaaaaaagaat 45065319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 37077365 - 37077432
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaatataggaagtactaaa 463  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||  ||| |||||||||    
T  37077365 atttgttatcttggtttgtgtaaaagactcaaaagtgacaattaaaaaggaatggagggagtactaaa 37077432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 38148084 - 38148037
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  38148084 atttgttgtcttggcttgtgtaaaaaactcaaaagtgacaattaaaaa 38148037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 37660932 - 37660984
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaat 448  Q
    |||||||||||||||||||||||||||||||||| | | ||||||||| ||||    
T  37660932 atttgttgtcttggtttgtgtaaaaaacttaaaaataaaaattaaaaaggaat 37660984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 28967279 - 28967232
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  28967279 atttgttgttttggtttgtgtaaaaaactcaaaaatgacaattaaaaa 28967232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 30545484 - 30545526
Alignment:
Q  402 tgtcttggtttgtgtaaaaaa-cttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  30545484 tgtcttggtttgtgtaaaaaaactcaaaagtgacaattaaaaa 30545526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 1180947 - 1180900
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  1180947 atttgttgtcttggtttgtgtaaaaaacctaaaagtgacaattaaaaa 1180900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 1615101 - 1615054
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1615101 atttgttgtcttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 1615054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 37551710 - 37551665
Alignment:
Q  398 ttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  37551710 ttgttgtcttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 37551665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 9746426 - 9746473
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||    
T  9746426 atttgttgtcttggtttgtgtaaaaaattcaaaagtgacaattaaaaa 9746473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 3802358 - 3802410
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaat 448  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||| ||||    
T  3802358 atttgttgtcttggtttgtgtacgaaactcaaaagtgacaattaaaaaggaat 3802410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 443
Target Start/End: Complemental strand, 1146084 - 1146045
Alignment:
Q  404 tcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  1146084 tcttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 1146045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 41813843 - 41813890
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||    
T  41813843 attttttgccttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 41813890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 20294581 - 20294623
Alignment:
Q  401 ttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  20294581 ttgtcttgatttgtgtaaaaaacttaaaagtaacaattaaaaa 20294623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 53855564 - 53855616
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaat 448  Q
    ||||||||||||| |||||| |||||||| |||||||| ||||||||| ||||    
T  53855564 atttgttgtcttgatttgtggaaaaaactcaaaagtgataattaaaaaggaat 53855616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Original strand, 43086615 - 43086648
Alignment:
Q  410 tttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||| ||||||||||||||||||    
T  43086615 tttgtgtaaaaaactcaaaagtgacaattaaaaa 43086648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 2642897 - 2642944
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2642897 atttgttgtcttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 2642944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 443
Target Start/End: Original strand, 53055685 - 53055731
Alignment:
Q  397 tttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  53055685 tttgttgtcttgatttttgtaaaaaacttaaaagtgacaattaaaaa 53055731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 23771485 - 23771529
Alignment:
Q  399 tgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||    
T  23771485 tgttgtcttggtttgcgtaaaaaactcaaaagtgacaattaaaaa 23771529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 29748771 - 29748734
Alignment:
Q  406 ttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  29748771 ttggtttgtgtaaaaaactcaaaagtgacaattgaaaa 29748734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 458
Target Start/End: Complemental strand, 48981425 - 48981365
Alignment:
Q  398 ttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaatataggaagta 458  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| ||| | ||||||||    
T  48981425 ttgttgtcttggtttgtgtcaaaaactcaaaagtgacaattaaaaaggaacagaggaagta 48981365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 8965948 - 8965901
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  8965948 atttgttgtcttggtttgcgtaaaaaactcaaaagtgacaattaaaaa 8965901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 35684341 - 35684388
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||||    
T  35684341 atttgttgtcttggattgtgtaaaaaattcaaaagtgacaattaaaaa 35684388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 46563171 - 46563124
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  46563171 atttgttgtcttgtattgtgtaaaaaacataaaagtgacaattaaaaa 46563124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 3178127 - 3178172
Alignment:
Q  398 ttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||    
T  3178127 ttgttgtcttggtttgtgtcaaaaatctaaaagtgacaattaaaaa 3178172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 26803478 - 26803430
Alignment:
Q  396 atttgttgtcttggtttgtgtaa-aaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  26803478 atttgttgtcttggtttgtgtaaaaaaacccaaaagtgacaattaaaaa 26803430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 38168831 - 38168789
Alignment:
Q  401 ttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||||||||| | | ||||||||||||||||||    
T  38168831 ttgtcttggtttgtgtaaaatattaaaaagtgacaattaaaaa 38168789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 96107 - 96060
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||    
T  96107 atttgttgtcttggtttgtgtaaaaatctcaaaagtgacaattaaaaa 96060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 252789 - 252836
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  252789 atttcttgtcttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 252836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 8954744 - 8954697
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  8954744 atttgttgtcttagtttgtgtaaaaaactcaaaagtgacaattaaaaa 8954697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 11163461 - 11163508
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||    
T  11163461 atttgttgtcttggtttgtgtaaaaatctcaaaagtgacaattaaaaa 11163508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 443
Target Start/End: Complemental strand, 9301580 - 9301541
Alignment:
Q  404 tcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  9301580 tcttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 9301541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 38074471 - 38074521
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaa 447  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  38074471 atttgttgtcttgatttgtataaaaaactt-aaagtgacaattaaaaaagaa 38074521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 459
Target Start/End: Original strand, 11727777 - 11727840
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaatataggaagtac 459  Q
    ||||||||||||||||||||||||||  | ||| | |||||||||||| ||| | |||||||||    
T  11727777 atttgttgtcttggtttgtgtaaaaagttaaaatgcgacaattaaaaaggaacagaggaagtac 11727840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 19812151 - 19812198
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  19812151 atttgttgttttggtttgtgtaaaaaactcaaaagtgacaattaaaaa 19812198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 23331 - 23379
Alignment:
Q  396 atttgttgtcttggtttgtgt-aaaaaacttaaaagtgacaattaaaaa 443  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  23331 atttgttgtcttagtttgtgtaaaaaaactcaaaagtgacaattaaaaa 23379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 11248976 - 11249028
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaaagaat 448  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||||| ||||    
T  11248976 atttgttgtcttagtttgtgtaaaaaaatcaaaagtgacgattaaaaaggaat 11249028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 50152628 - 50152675
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||| ||||||| ||||| ||||||||| ||||||||||||||||||    
T  50152628 atttgctgtcttgatttgtataaaaaactcaaaagtgacaattaaaaa 50152675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Complemental strand, 14296 - 14249
Alignment:
Q  396 atttgttgtcttggtttgtgtaaaaaacttaaaagtgacaattaaaaa 443  Q
    ||||||||||||| ||| ||||||| ||| ||||||||||||||||||    
T  14296 atttgttgtcttgatttctgtaaaagactcaaaagtgacaattaaaaa 14249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University