View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_20 (Length: 393)
Name: NF9122_low_20
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 169 - 344
Target Start/End: Complemental strand, 39909999 - 39909824
Alignment:
| Q |
169 |
tctattttagtgatctaaattagacacatcattatctcgtaaagtatttgttagtgaaaatcaatatcactcccttnnnnnnntaaattatcatcgataa |
268 |
Q |
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| T |
39909999 |
tctattttagtgatctaaattagacacatcattctctcgtaaaataattgttagtgaaaatcaatatcactcccttaaaaaaaataattatcatcgataa |
39909900 |
T |
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| Q |
269 |
agttatatggattgatcctaaaaaagaagataatttcatatagatttaattttcttttttaccaaaacaacgtatc |
344 |
Q |
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| T |
39909899 |
agttatatggattgatcctaaaaaagaagataatttcatatagatttaattttcttttttagcaaaaaaacgtatc |
39909824 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 39910165 - 39910082
Alignment:
| Q |
1 |
cattataaggtacgtataaaagggtacggcctcgtgtttttgtgaaataaatactagtataggagagtatttattcgtaatggtc |
85 |
Q |
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| T |
39910165 |
cattataaggtacgtataaaagggtacggcctcgtgtttttgtgaaataaatactagtataggagagtattt-ttcgtagtggtc |
39910082 |
T |
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