View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_21 (Length: 380)
Name: NF9122_low_21
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 53147749 - 53147395
Alignment:
| Q |
18 |
gataaaatattttagggattgatatgatacggaaataaataaaaatcagtgatacgtcaacattcctgactttctggatccctcatactttttgctatct |
117 |
Q |
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| T |
53147749 |
gataaaatattttagggattgatatgatacggaaataaataaaa-tcagtgatacgtcaacattcctgactttctggatccctcatactttttgctatct |
53147651 |
T |
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| Q |
118 |
gtagatcttgggaaacatgatgatgattgaaaggcatgtaggggggaccaccttatcttttatagtagtgcataattaaataaaattatttataaaatag |
217 |
Q |
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| T |
53147650 |
gtagatcttgggaaacatgatgatgattgaaaggcatgtaggggggaccaccttatcttttatagtagtgcataattaaataaaattatttataaaatag |
53147551 |
T |
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| Q |
218 |
gattattttctaaacaatgcttttaaataaaacataccgacatatatannnnnnnnataattgcttgtagtcacagaaatgggatcctatgattacaacc |
317 |
Q |
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| T |
53147550 |
gattattttctaaacaatgcttttaaataaaacataccgacatatatatattttttataattgcttgtagtcacagaaatgggatcctatgattacaacc |
53147451 |
T |
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| Q |
318 |
accggcagttccaccnnnnnnnttcatggcacgtgacgtgattttactaacatcat |
373 |
Q |
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| T |
53147450 |
accggcagttccaccaaaaaaaatcatggcacgtgacatgattttactaacatcat |
53147395 |
T |
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