View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9122_low_23 (Length: 377)

Name: NF9122_low_23
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9122_low_23
NF9122_low_23
[»] chr6 (4 HSPs)
chr6 (14-157)||(301778-301924)
chr6 (154-245)||(301644-301735)
chr6 (288-362)||(301527-301601)
chr6 (60-104)||(300607-300651)
[»] chr2 (8 HSPs)
chr2 (288-362)||(32565380-32565454)
chr2 (288-362)||(32806565-32806639)
chr2 (288-362)||(32309381-32309455)
chr2 (288-362)||(32815002-32815076)
chr2 (293-362)||(28215617-28215686)
chr2 (317-362)||(32799640-32799685)
chr2 (293-362)||(28220538-28220604)
chr2 (288-331)||(32305344-32305387)
[»] chr3 (1 HSPs)
chr3 (62-104)||(38238862-38238904)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 301924 - 301778
Alignment:
Q  14 agatagcatatataagagtttcacnnnnnnnncttcaattatagtaaagtaaagtaaaccattatgaaacaaagatctatgcagta---aatatagagcc 110  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  301924 agatagcatatataagagtttcacttttttttcttcaattatagtaaagtaaagtaaaccattatgaaacaaagatctatgcagtagtaaatatagagcc 301825  T
Q  111 tgtaaaatttaggatatcaatattcactatttcatagagcctgtaaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  301824 tgtaaaatttaggatatcaatattcactatttcatagagcctataaa 301778  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 301735 - 301644
Alignment:
Q  154 taaatttatgatcttggatgcaaaatgcacaaaaataaagacacctcgtttccaccacataactgaagaacaataaagactccattttcaca 245  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  301735 taaatttataatcttggatgcaaaatgcacaaaaataaagacacctcgtttccaccacataactgaagaacaataaagactccattttcaca 301644  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 301601 - 301527
Alignment:
Q  288 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  301601 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatat 301527  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 300651 - 300607
Alignment:
Q  60 aagtaaagtaaaccattatgaaacaaagatctatgcagtaaatat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  300651 aagtaaagtaaaccattatgaaacaaagatctatgcagtaaatat 300607  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 32565380 - 32565454
Alignment:
Q  288 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 362  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32565380 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 32565454  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 32806565 - 32806639
Alignment:
Q  288 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 362  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32806565 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 32806639  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 32309455 - 32309381
Alignment:
Q  288 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 362  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32309455 ttacctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 32309381  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 32815002 - 32815076
Alignment:
Q  288 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 362  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32815002 ttacctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 32815076  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 28215617 - 28215686
Alignment:
Q  293 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  28215617 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatat 28215686  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 32799640 - 32799685
Alignment:
Q  317 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32799640 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 32799685  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 28220604 - 28220538
Alignment:
Q  293 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatat 362  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  28220604 tggatgaagcaatcatgaaa--agagacgaagaagagaaggtgc-aggtctctatgattaaagtaaatat 28220538  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 32305387 - 32305344
Alignment:
Q  288 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaa 331  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  32305387 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaa 32305344  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 38238862 - 38238904
Alignment:
Q  62 gtaaagtaaaccattatgaaacaaagatctatgcagtaaatat 104  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  38238862 gtaaagtaaaccattatgaaacaaaggtctatacagtaaatat 38238904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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