View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_26 (Length: 373)
Name: NF9122_low_26
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 358
Target Start/End: Original strand, 40986595 - 40986941
Alignment:
| Q |
9 |
gcagagaggccagtagaagttgagatgatgagaaaaggctttttcacatcgcaactcaacgataatataaacaaaatcatcttcctaacccgctcctgca |
108 |
Q |
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| T |
40986595 |
gcagagaggccagtagaagttgagatgatgagaaaaggctttttcacatcgcaactcaatgataatataaacaaaatcatcttcctaacccgctcctgca |
40986694 |
T |
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| Q |
109 |
aatgtagtttaacaataaatcagggattctactatgtaatctgaataattcaccaaccattacaaactccagcctcctaccttatacatttgacacttca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40986695 |
aatgtagtttaacaataaatcagggattctactatgtaatctgaataattcaccaaccattacaaactccagcctcctagcttatacatttgacacttca |
40986794 |
T |
|
| Q |
209 |
aacattagtgtcatatttttcttacagcaagtcttcatattaatattgcaacttgttaaaattcttttacaactataaacatacaacatgacaagtaaaa |
308 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40986795 |
aacattagtgtaatatttttcttacagcaagtcttcatattaatattgcaacttgttaaaattcttttacaactataaacat---acatgacaagtaaaa |
40986891 |
T |
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| Q |
309 |
gttgcaacgtttggatgcttattaaagatgaatgtccaaaggttgatgct |
358 |
Q |
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| T |
40986892 |
gttgcaacgtttggatgcttattaaagatgaatgtccaaaggttgatgct |
40986941 |
T |
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