View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9122_low_27 (Length: 365)
Name: NF9122_low_27
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 191 - 362
Target Start/End: Complemental strand, 44596576 - 44596405
Alignment:
| Q |
191 |
gatatcttttgttataatgtgtatgtgtaattgaagctgggcaaattacacatacacatttccggaaagtgatgttaacgtcgcaaagagtcttcacgaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44596576 |
gatatcttttgttataatgtgtatgtataattgaagctgggcaaattacacatacacatttccggaaagtgatgttaacgtcgcaaagagtcttcacgaa |
44596477 |
T |
|
| Q |
291 |
tataatgatatattgaagctgggctcccctcaacatgtgaaagtcataaagataaagcagtaacaccaaact |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44596476 |
tataatgatatattgaagctgggctcccctcaacatgtgaaagtcataaagataaagcagtaacacctaact |
44596405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 44597627 - 44597453
Alignment:
| Q |
19 |
aaaaaggtttacatattatatatgtaaagagtatgttcgaattaaaatttgggggaagggtatgtgttagtgaaggtgcattacataatggatattcaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44597627 |
aaaaaggtttacatattatatatgtaaagagtatgttcgaattaaaatttgggggaagggtatgtgttagtgaagctgcattacataatggatattcaga |
44597528 |
T |
|
| Q |
119 |
gattgagtgttgttttccaaaaaattaagtatgcatgtgcttccattgtatgacgtggctggctaccttcatgat |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
44597527 |
gattgagtattgttttccaaaaaattaagtatgcatgtgcttccattgtatgacgtggttggctacattcatgat |
44597453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University