View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_29 (Length: 354)
Name: NF9122_low_29
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_29 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: scaffold0135 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 38570 - 38272
Alignment:
| Q |
1 |
taaatttggactctttaacttcatatccggaatctttattaaacttcatgcaatatgaaaagaaaacgattaaaatatgcaagtgaaaaacactatatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38570 |
taaatttggactctttaacttcatatccggaatctttattaaacttcatgcaatgagaaaagaaaacgattaaaatatgcaagtgaaaaacactatatat |
38471 |
T |
|
| Q |
101 |
tgtgattatctaatctctaccatatctgaattgatatctttagtggttgatccaggccttgcaactatgctttgaaggataaatttatctttcaattgca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38470 |
tgtgattatctaatctctaccatatctgaagtgatatctttagtggttgatccaggccttgcaactatgctttgaaggataaatttatctttcaattgca |
38371 |
T |
|
| Q |
201 |
tgtcaggaggtgcctcctctagggcttgcattgtaactataaataatcatcaagtaaacaaggattctacatagttagaaaagtaagtatgaaagaaca |
299 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38370 |
tgtcaggaggtgcctcttctagggcttgcattgtaactataaacaatcattaagtaaacaaggattctacatagttagaaaagtgagtatgaaagaaca |
38272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 9232704 - 9232406
Alignment:
| Q |
1 |
taaatttggactctttaacttcatatccggaatctttattaaacttcatgcaatatgaaaagaaaacgattaaaatatgcaagtgaaaaacactatatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9232704 |
taaatttggactctttaacttcatatccggaatctttattaaacttcatgcaatgagaaaagaaaacgattaaaatatgcaagtgaaaaacactatatat |
9232605 |
T |
|
| Q |
101 |
tgtgattatctaatctctaccatatctgaattgatatctttagtggttgatccaggccttgcaactatgctttgaaggataaatttatctttcaattgca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9232604 |
tgtgattatctaatctctaccatatctgaagtgatatctttagtggttgatccaggccttgcaactatgctttgaaggataaatttatctttcaattgca |
9232505 |
T |
|
| Q |
201 |
tgtcaggaggtgcctcctctagggcttgcattgtaactataaataatcatcaagtaaacaaggattctacatagttagaaaagtaagtatgaaagaaca |
299 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9232504 |
tgtcaggaggtgcctcttctagggcttgcattgtaactataaacaatcattaagtaaacaaggattctacatagttagaaaagtgagtatgaaagaaca |
9232406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 118 - 302
Target Start/End: Complemental strand, 9257684 - 9257500
Alignment:
| Q |
118 |
taccatatctgaattgatatctttagtggttgatccaggccttgcaactatgctttgaaggataaatttatctttcaattgcatgtcaggaggtgcctcc |
217 |
Q |
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||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
9257684 |
taccatatctgaagtgatatctttagtggtagctccaggccttgcaactatgctttgaaggagaaacttatctttgcattgcatgtcaggaggtgcctcc |
9257585 |
T |
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| Q |
218 |
tctagggcttgcattgtaactataaataatcatcaagtaaacaaggattctacatagttagaaaagtaagtatgaaagaacagaa |
302 |
Q |
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|||||||||||||||||||||||||| | |||| ||||||| || ||| |||| |||||| |||||| ||||| ||||||||||| |
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| T |
9257584 |
tctagggcttgcattgtaactataaagagtcattaagtaaaaaatgatgctacttagttataaaagtgagtataaaagaacagaa |
9257500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 9168036 - 9168324
Alignment:
| Q |
1 |
taaatttggactctttaacttcatatccggaatctttattaaacttcatgcaatatgaaaagaaaacgattaaaatatgcaa-----gtgaaaaacacta |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| || ||| ||||||||| |
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| T |
9168036 |
taaatttggactctttaacttcatatccggaatctttataaaacttcatgcaatgaaaaaagaaaacaattaaaatatgaaatgttggtggaaaacacta |
9168135 |
T |
|
| Q |
96 |
tatattgtgattatctaatctct-accatatctgaattgatatctttagtggttgatccaggccttgcaactatgctttgaaggataaatttatctttca |
194 |
Q |
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| | | | | | | | | |||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
9168136 |
tcaagaaacaatttgttgtttgttaccatatctgaagtgatatctttagtggtagctccaggccttgcaactatgctttgaaggagaaacttatctttgc |
9168235 |
T |
|
| Q |
195 |
attgcatgtcaggaggtgcctcctctagggcttgcattgtaactataaataatcatcaagtaaacaaggattctacatagttagaaaag |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| ||| | |||| | |||||||||| |
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| T |
9168236 |
attgcatgtcaggaggtgcctcctctagggcttgcattgtaactataaagagtcattaagtaaaaaagaacgctactttgttagaaaag |
9168324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9257807 - 9257729
Alignment:
| Q |
1 |
taaatttggactctttaacttcatatccggaatctttattaaacttcatgcaatatgaaaagaaaacgattaaaatatg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
9257807 |
taaatttggactctttaacttcatatccggaatctttataaaacttcatgcaatgaaaaaagaaaacaattaaaatatg |
9257729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 9309017 - 9309138
Alignment:
| Q |
118 |
taccatatctgaattgatatctttagtggttgatccaggccttgcaactatgctttgaaggataaatttatctttcaattgcatgtcaggaggtgcctcc |
217 |
Q |
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|||||| |||| | |||||||||| | |||| |||||| |||||||||| ||| ||||||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
9309017 |
taccatttctggagtgatatcttttgccgttgctccagggcttgcaactacgctctgaaggagaaacttatctttgcattgcatgtcaggaggtgcctcc |
9309116 |
T |
|
| Q |
218 |
tctagggcttgcattgtaacta |
239 |
Q |
| |
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| | || ||||||||||||||| |
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| T |
9309117 |
ttttggccttgcattgtaacta |
9309138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 9133948 - 9134036
Alignment:
| Q |
151 |
tccaggccttgcaactatgctttgaaggataaatttatctttcaattgcatgtcaggaggtgcctcctctagggcttgcattgtaacta |
239 |
Q |
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|
|||||||||||||| | || ||||| || ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
9133948 |
tccaggccttgcaaacacgcgttgaatgacaaaagtatctttgcattgcatgtcaggaggtgcctcctcttgggcttgcattgtaacta |
9134036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 9156341 - 9156220
Alignment:
| Q |
118 |
taccatatctgaattgatatctttagtggttgatccaggccttgcaactatgctttgaaggataaatttatctttcaattgcatgtcaggaggtgcctcc |
217 |
Q |
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|||||| |||||| ||||||||| ||||||| |||||| |||||||||||||||||| || ||| ||||| | | ||||||| ||||||||||| | |
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| T |
9156341 |
taccatttctgaagtgatatcttctgtggttgcaccaggctttgcaactatgctttgaatgagaaacttatcgatgcaatgcatgttaggaggtgccttc |
9156242 |
T |
|
| Q |
218 |
tctagggcttgcattgtaacta |
239 |
Q |
| |
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| | | |||||||||||||||| |
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| T |
9156241 |
ttttgagcttgcattgtaacta |
9156220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 9300638 - 9300561
Alignment:
| Q |
161 |
gcaactatgctttgaaggataaatttatctttcaattgcatgtcaggaggtgcctcctctagggcttgcattgtaact |
238 |
Q |
| |
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|||||||||||| |||||| ||| ||||| || |||||||||||||||||||||||| | | |||||||||||||| |
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| T |
9300638 |
gcaactatgcttcgaaggagaaacttatcattgcattgcatgtcaggaggtgcctccttttagccttgcattgtaact |
9300561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 9156435 - 9156378
Alignment:
| Q |
23 |
atatccggaatctttattaaacttcatgcaatatgaaaagaaaacgattaaaatatgca |
81 |
Q |
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|||||||||||||| | ||||| |||||||| | |||||||||||||||||||||||| |
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| T |
9156435 |
atatccggaatcttgaaaaaactacatgcaat-taaaaagaaaacgattaaaatatgca |
9156378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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